(Q34276079)

1 August 2017

title

Three genome-based phylogeny of Cupressaceae s.l.: further evidence for the evolution of gymnosperms and Southern Hemisphere biogeography (English)

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1 August 2017

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Cupressaceae

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Zu-Yu Yang

1

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1 August 2017

Jin-Hua Ran

series ordinal

2

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1 August 2017

Xiao-Quan Wang

series ordinal

3

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1 August 2017

publication date

18 May 2012

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Molecular Phylogenetics and Evolution

1 August 2017

number of pages

19

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based on heuristic

inferred from page(s)

published in

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1 August 2017

volume

64

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1 August 2017

issue

3

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1 August 2017

page(s)

452-470

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

1 August 2017

1 reference

Molecular dating of the ‘Gondwanan’ plant family Proteaceae is only partially congruent with the timing of the break-up of Gondwana

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Phylogenetic Relationships Among the Genera of Taxodiaceae and Cupressaceae: Evidence from rbcL Sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Phylogeny of Taxaceae and Cephalotaxaceae Genera Inferred from Chloroplast matK Gene and Nuclear rDNA ITS Region

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Hypothesis testing in biogeography

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Widespread genome duplications throughout the history of flowering plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Seed plant phylogeny: Demise of the anthophyte hypothesis?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

A Floricaula/Leafy gene homolog is preferentially expressed in developing female cones of the tropical pine Pinus caribaea var. caribaea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Evolutionary genetics of genome merger and doubling in plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

BEAST: Bayesian evolutionary analysis by sampling trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

A New Genus and Species in Cupressaceae (Coniferales) from Northern Vietnam, Xanthocyparis vietnamensis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Testing Significance of Incongruence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Confidence Limits on Phylogenies: an Approach using the Bootstrap

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Phylogenies from molecular sequences: inference and reliability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Relationships within Cupressaceae sensu lato: a combined morphological and molecular approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Correlation of functional domains and rates of nucleotide substitution in cytochrome b.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Potential phylogenetic utility of the nuclear FLORICAULA/LEAFY second intron: comparison with three chloroplast DNA regions in Amorphophallus (Araceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The evolutionary split of Pinaceae from other conifers: evidence from an intron loss and a multigene phylogeny.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Seed plant phylogeny: gnetophytes are derived conifers and a sister group to Pinaceae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Genomic clues to the evolutionary success of polyploid plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Southern Conifers in Time and Space

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

A new species of Fitzroya (Cupressaceae) from oligocene sediments in north-western Tasmania

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Application of phylogenetic networks in evolutionary studies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Allopolyploid speciation in Persicaria (Polygonaceae): insights from a low-copy nuclear region

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Relaxed molecular clock provides evidence for long-distance dispersal of Nothofagus (southern beech)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Molecular clocks: four decades of evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Phylogenetic relationships in Taxodiaceae and Cupressaceae sensu stricto based on matK gene, chlL gene, trnL-trnF IGS region, and trnL intron sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Molecular evolution of nuclear genes in Cupressacea, a group of conifer trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Nuclear DNA C-values Complete Familial Representation in Gymnosperms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Contrasting patterns of radiation in African and Australian Restionaceae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Evolution and Circumscription of the True Cypresses (Cupressaceae: Cupressus)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The circumscription and phylogenetic relationships of Callitropsis and the newly described genus Xanthocyparis (Cupressaceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Gene Trees in Species Trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Angiosperm divergence times: the effect of genes, codon positions, and time constraints

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The floral regulator LEAFY evolves by substitutions in the DNA binding domain.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

PRFLL--a Pinus radiata homologue of FLORICAULA and LEAFY is expressed in buds containing vegetative shoot and undifferentiated male cone primordia

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

ON THE ABUNDANCE OF POLYPLOIDS IN FLOWERING PLANTS

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The Hows and Whys of Cytoplasmic Inheritance in Seed Plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

NEEDLY, a Pinus radiata ortholog of FLORICAULA/LEAFY genes, expressed in both reproductive and vegetative meristems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Phylogenetic utility of the second intron of LEAFY in Neillia and Stephanandra (Rosaceae) and implications for the origin of Stephanandra.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Early Oligocene Callitris and Fitzroya (Cupressaceae) from Tasmania

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Reticulate evolution in Thuja inferred from multiple gene sequences: implications for the study of biogeographical disjunction between eastern Asia and North America

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

MODELTEST: testing the model of DNA substitution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

An Immunological Comparison of the Sciadopityaceae, Taxodiaceae, and Cupressaceae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Familial Concepts and Relationships in the Conifer Based on rbcL and matK Sequence Comparisons

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Inference of higher-order conifer relationships from a multi-locus plastid data setThis paper is one of a selection of papers published in the Special Issue on Systematics Research

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Neopolyploidy in Flowering Plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

A test of seven candidate barcode regions from the plastome in Picea (Pinaceae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

MrBayes 3: Bayesian phylogenetic inference under mixed models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Seed Plant Relationships and the Systematic Position of Gnetales Based on Nuclear and Chloroplast DNA: Conflicting Data, Rooting Problems, and the Monophyly of Conifers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Utility of low-copy nuclear gene sequences in plant phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Southern hemisphere biogeography inferred by event-based models: plant versus animal patterns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Using fossils and molecular data to reveal the origins of the Cape proteas (subfamily Proteoideae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Chromosome number and morphology in the conifers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The evolution of gymnosperms redrawn by phytochrome genes: the Gnetatae appear at the base of the gymnosperms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Evolution of taxodiaceous Cupressaceae (Coniferopsida)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Isolation and functional analysis of the CjNdly gene, a homolog in Cryptomeria japonica of FLORICAULA/LEAFY genes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The role of hybridization in plant speciation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Missing links: the genetic architecture of flowers [correction of flower] and floral diversification

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The Chromosomes and Relationships of Metasequoia and Sequoia

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Phylogenetic relationships of conifers inferred from partial 28S rRNA gene sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Diversity among Taxodioid Conifers: Metasequoia foxii sp. nov. from the Paleocene of Central Alberta, Canada

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Diversification of gene function: homologs of the floral regulator FLO/LFY control the first zygotic cell division in the moss Physcomitrella patens

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Estimating the rate of evolution of the rate of molecular evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Molecular phytogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Gondwanan break-up: legacies of a lost world?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The evolutionary significance of ancient genome duplications

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Characterization of the expression patterns of LEAFY/FLORICAULA and NEEDLY orthologs in female and male cones of the conifer genera Picea, Podocarpus, and Taxus: implications for current evo-devo hypotheses for gymnosperms.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Origin and diversification of the Greater Cape flora: ancient species repository, hot-bed of recent radiation, or both?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Phylogeny and divergence times in Pinaceae: evidence from three genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The distribution of species diversity across a flora's component lineages: dating the Cape's 'relicts'

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Molecular phylogeny and biogeography of Pseudotsuga (Pinaceae): insights into the floristic relationship between Taiwan and its adjacent areas.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Deciphering ancient rapid radiations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Yesterday's polyploids and the mystery of diploidization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

Dating dispersal and radiation in the gymnosperm Gnetum (Gnetales)--clock calibration when outgroup relationships are uncertain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

The frequency of polyploid speciation in vascular plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

PAML 4: phylogenetic analysis by maximum likelihood

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

A taxodiaceous seed cone from the Triassic of Antarctica

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.05.004

10.1016/J.YMPEV.2012.05.004

7 January 2021

Identifiers

DOI

1 reference

1 August 2017

1 reference