(Q34276978)

1 August 2017

title

The layer-oriented approach to declarative languages for biological modeling (English)

1 reference

1 August 2017

2

0 references

author name string

Ivan Raikov

series ordinal

1

1 reference

1 August 2017

publication date

17 May 2012

1 reference

PLOS Computational Biology

1 August 2017

published in

1 reference

1 August 2017

volume

8

1 reference

1 August 2017

issue

5

1 reference

1 August 2017

page(s)

e1002521

1 reference

Creative Commons Attribution 4.0 International

1 August 2017

copyright license

start time

17 May 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Neuron

object named as

NEURON

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Neuron

0 references

cites work

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Multiple ontologies in action: composite annotations for biosimulation models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Determining k channel activation curves from k channel currents often requires the goldman-hodgkin-katz equation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

PyNN: A Common Interface for Neuronal Network Simulators

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Specifications of insilicoML 1.0: a multilevel biophysical model description language

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Accessing and integrating data and knowledge for biomedical research.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Why are computational neuroscience and systems biology so separate?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Interoperability of neuroscience modeling software: current status and future directions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Stochastic P systems and the simulation of biochemical processes with dynamic compartments.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Stochastic simulation of chemical kinetics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Addressing the problems with life-science databases for traditional uses and systems biology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

A quantitative description of membrane current and its application to conduction and excitation in nerve

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

Towards NeuroML: model description methods for collaborative modelling in neuroscience

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

The International Neuroinformatics Coordinating Facility: evaluating the first years.

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002521

Code generation: a strategy for neural network simulators.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002521

Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002521

Simulation of intrinsic bursting in CA3 hippocampal neurons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002521

Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002521

Notable design patterns for domain-specific languages

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002521

The contribution of resurgent sodium current to high-frequency firing in Purkinje neurons: an experimental and modeling study.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355071

The promise and shortcomings of XML as an interchange format for computational models of biology

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22615554

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22615554

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1002521

1 reference

journals/ploscb/RaikovS12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_pjifixntkjaihcjcy4npqdyvsm

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/pjifixntkjaihcjcy4npqdyvsm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3355071

1 reference

1 August 2017

1 reference