(Q34288751)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

title

Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

9

1 reference

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2 February 2020

Roger Kouyos

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Ilka Hoof

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Christos J Petropoulos

7

object named as

Christos J Petropoulos

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

author name string

Rafal Mostowy

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Trevor Hinkley

4

1 reference

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2 February 2020

Mojgan Haddad

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Jeannette M Whitcomb

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Can Keşmir

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

publication date

24 May 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

2 February 2020

published in

1 reference

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2 February 2020

volume

8

1 reference

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2 February 2020

issue

5

1 reference

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2 February 2020

page(s)

e1002525

1 reference

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Creative Commons Attribution 4.0 International

2 February 2020

copyright license

start time

24 May 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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6 July 2018

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New paradigms for HIV/AIDS vaccine development

6 July 2018

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Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic

6 July 2018

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Molecular footprints reveal the impact of the protective HLA-A*03 allele in hepatitis C virus infection

6 July 2018

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HLA-A*7401-mediated control of HIV viremia is independent of its linkage disequilibrium with HLA-B*5703

6 July 2018

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The role of recombination for the coevolutionary dynamics of HIV and the immune response

6 July 2018

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Dynamics of viral evolution and CTL responses in HIV-1 infection

6 July 2018

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Modelling the evolution and spread of HIV immune escape mutants

6 July 2018

1 reference

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Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins.

6 July 2018

1 reference

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The major genetic determinants of HIV-1 control affect HLA class I peptide presentation

6 July 2018

1 reference

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The HIV hide and seek game: an immunogenomic analysis of the HIV epitope repertoire

6 July 2018

1 reference

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Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response

6 July 2018

1 reference

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T-cell epitope prediction: rescaling can mask biological variation between MHC molecules

6 July 2018

1 reference

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Adaptation of HIV-1 to human leukocyte antigen class I

6 July 2018

1 reference

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Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Human immunodeficiency virus type 1 population genetics and adaptation in newly infected individuals.

6 July 2018

1 reference

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NetMHCpan, a method for MHC class I binding prediction beyond humans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Adaptive immune responses to hepatitis C virus: from viral immunobiology to a vaccine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Challenges in the development of an HIV-1 vaccine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

6 July 2018

1 reference

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Capturing escape in infectious disease dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Dynamics of immune escape during HIV/SIV infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Impact of MHC class I diversity on immune control of immunodeficiency virus replication

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Central role of reverting mutations in HLA associations with human immunodeficiency virus set point

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

HLA alleles associated with slow progression to AIDS truly prefer to present HIV-1 p24.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

High-resolution HLA alleles and haplotypes in the United States population

6 July 2018

1 reference

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Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A.

6 July 2018

1 reference

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NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Patterns of antigenic diversity and the mechanisms that maintain them

6 July 2018

1 reference

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Effective T-cell responses select human immunodeficiency virus mutants and slow disease progression

6 July 2018

1 reference

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In vivo CD8+ T cell control of immunodeficiency virus infection in humans and macaques

6 July 2018

1 reference

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Adaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C Virus

6 July 2018

1 reference

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Dual selection pressure by drugs and HLA class I-restricted immune responses on human immunodeficiency virus type 1 protease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Predictability and preparedness in influenza control

6 July 2018

1 reference

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Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Mutational escape from CD8+ T cell immunity: HCV evolution, from chimpanzees to man

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

HIV and SIV CTL escape: implications for vaccine design

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Mapping the antigenic and genetic evolution of influenza virus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Persistent recognition of autologous virus by high-avidity CD8 T cells in chronic, progressive human immunodeficiency virus type 1 infection.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Differential proteasomal processing of hydrophobic and hydrophilic protein regions: contribution to cytotoxic T lymphocyte epitope clustering in HIV-1-Nef.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Antibody neutralization and escape by HIV-1

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

The influence of HLA genotype on AIDS

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Comprehensive epitope analysis of human immunodeficiency virus type 1 (HIV-1)-specific T-cell responses directed against the entire expressed HIV-1 genome demonstrate broadly directed responses, but no correlation to viral load.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Understanding cytotoxic T-lymphocyte escape during simian immunodeficiency virus infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Effect of a single amino acid change in MHC class I molecules on the rate of progression to AIDS

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

A novel phenotypic drug susceptibility assay for human immunodeficiency virus type 1

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid composition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Amino acid substitution matrices from protein blocks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Positive selection of cytotoxic T lymphocyte escape variants during acute hepatitis C virus infection

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

CD8+ T-cell responses to different HIV proteins have discordant associations with viral load

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

Loss of Viral Control in Early HIV‐1 Infection Is Temporally Associated with Sequential Escape from CD8+T Cell Responses and Decrease in HIV–1–Specific CD4+and CD8+T Cell Frequencies

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

Eventual AIDS vaccine failure in a rhesus monkey by viral escape from cytotoxic T lymphocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

HIV evolution: CTL escape mutation and reversion after transmission

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

A comparative study of HLA binding affinity and ligand diversity: implications for generating immunodominant CD8+ T cell responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

Impact of HLA-B alleles, epitope binding affinity, functional avidity, and viral coinfection on the immunodominance of virus-specific CTL responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

Conflicting selective forces affect T cell receptor contacts in an immunodominant human immunodeficiency virus epitope

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002525

HIV prevalence estimates--United States, 2006.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3359966

Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS

28 October 2018

1 reference

12 December 2020

Rates of HIV immune escape and reversion: implications for vaccination

1 reference

12 December 2020

Self peptides bound by HLA class I molecules are derived from highly conserved regions of a set of evolutionarily conserved proteins

1 reference

12 December 2020

HLA and AIDS: a cautionary tale

1 reference

12 December 2020

HLA-B molecules target more conserved regions of the HIV-1 proteome

1 reference

12 December 2020

Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1002525

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/MostowyKHHHWPKB12

2 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22654656%20AND%20SRC:MED&resulttype=core&format=json