(Q34298522)

1 August 2017

Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study (English)

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1 August 2017

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4

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Hervé Philippe

series ordinal

3

object named as

Hervé Philippe

1 reference

1 August 2017

1

Omar Rota-Stabelli

1 reference

1 August 2017

Nicolas Lartillot

2

1 reference

1 August 2017

6 September 2012

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1 August 2017

1 reference

1 August 2017

62

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1 August 2017

121-133

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1 August 2017

1

1 reference

Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

1 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

A site- and time-heterogeneous model of amino acid replacement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Hemocyanin suggests a close relationship of Remipedia and Hexapoda.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Modeling compositional heterogeneity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Inferring phylogenies from DNA sequences of unequal base compositions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Evaluating the robustness of phylogenetic methods to among-site variability in substitution processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

A new method for calculating evolutionary substitution rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

An improved general amino acid replacement matrix

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Substitutional bias confounds inference of cyanelle origins from sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

GCUA: general codon usage analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

A phylogenomic approach to resolve the arthropod tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Statistical comparison of nucleotide, amino acid, and codon substitution models for evolutionary analysis of protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Models of amino acid substitution and applications to mitochondrial protein evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Evidence for a High Frequency of Simultaneous Double-Nucleotide Substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS077

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYS077

1 reference

1 August 2017

1 reference

PubMed ID

22962005