(Q34318728)

1 August 2017

title

In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome (English)

1 reference

1 August 2017

1 reference

4

Christopher M Dobson

1 reference

1 August 2017

3

Michele Vendruscolo

1 reference

1 August 2017

Prajwal Ciryam

1

1 reference

1 August 2017

Richard I Morimoto

series ordinal

2

1 reference

1 August 2017

Edward P O'Brien

series ordinal

5

1 reference

1 August 2017

language of work or name

English

0 references

publication date

19 December 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

1 August 2017

published in

1 reference

1 August 2017

volume

110

1 reference

1 August 2017

issue

2

1 reference

1 August 2017

page(s)

E132-40

1 reference

The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria

1 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

The ribosome modulates nascent protein folding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Kinetic analysis of ribosome-bound fluorescent proteins reveals an early, stable, cotranslational folding intermediate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

The ribosome uses two active mechanisms to unwind messenger RNA during translation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Ligand-driven vectorial folding of ribosome-bound human CFTR NBD1

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Extending CATH: increasing coverage of the protein structure universe and linking structure with function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Transient tertiary structure formation within the ribosome exit port

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Cotranslational structure acquisition of nascent polypeptides monitored by NMR spectroscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Global and local depletion of ternary complex limits translational elongation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Increased incidence of rare codon clusters at 5' and 3' gene termini: implications for function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Slowing bacterial translation speed enhances eukaryotic protein folding efficiency

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Converging concepts of protein folding in vitro and in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Tertiary interactions within the ribosomal exit tunnel

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Data growth and its impact on the SCOP database: new developments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Structure and dynamics of a ribosome-bound nascent chain by NMR spectroscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Global aggregation of newly translated proteins in an Escherichia coli strain deficient of the chaperonin GroEL.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Molecular simulations of cotranslational protein folding: fragment stabilities, folding cooperativity, and trapping in the ribosome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Why highly expressed proteins evolve slowly

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Protein length in eukaryotic and prokaryotic proteomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Recombinant protein folding and misfolding in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Contact order revisited: influence of protein size on the folding rate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Trigger Factor and DnaK possess overlapping substrate pools and binding specificities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

mRNA composition and control of bacterial gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Identification of thermolabile Escherichia coli proteins: prevention and reversion of aggregation by DnaK and ClpB.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

6 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Recombination of protein domains facilitated by co-translational folding in eukaryotes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Function of trigger factor and DnaK in multidomain protein folding: increase in yield at the expense of folding speed

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

Prediction of variable translation rate effects on cotranslational protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

Protein domain decomposition using a graph-theoretic approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

Integrated prediction of protein folding and unfolding rates from only size and structural class

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

Protein folding rates and stability: how much is there beyond size?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

DnaK functions as a central hub in the E. coli chaperone network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

Temperature-dependent Hammond behavior in a protein-folding reaction: analysis of transition-state movement and ground-state effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1213624110

Evolutionary adaptation to temperature. VIII. Effects of temperature on growth rate in natural isolates of Escherichia coli and Salmonella enterica from different thermal environments

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545769

Dynamics of trigger factor interaction with translating ribosomes

28 October 2018

1 reference

12 December 2020

Traveling Time of a translating ribosome along messenger RNA monitored directly on a quartz crystal microbalance

1 reference

12 December 2020

Concerted action of the ribosome and the associated chaperone trigger factor confines nascent polypeptide folding

1 reference

12 December 2020

New scenarios of protein folding can occur on the ribosome

1 reference

12 December 2020

Co-translational folding of an alphavirus capsid protein in the cytosol of living cells

1 reference

12 December 2020

Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation

1 reference

12 December 2020

Signal Recognition Particle (SRP)-mediated Targeting and Sec-dependent Translocation of an ExtracellularEscherichia coliProtein

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1213624110

1 reference

1 August 2017

0 references

1 reference

1 August 2017

1 reference