(Q34348123)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

title

Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

main subject

transcriptome

0 references

Acetivibrio thermocellus

object named as

Clostridium thermocellum

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Timothy Tschaplinski

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Robert Hettich

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Steven D Brown

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

author name string

Shihui Yang

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Richard J Giannone

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Lezlee Dice

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Zamin K Yang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

language of work or name

English

0 references

publication date

23 July 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

page(s)

336

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

8 February 2020

cites work

1 reference

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Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405.

6 July 2018

1 reference

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Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.

6 July 2018

1 reference

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Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

6 July 2018

1 reference

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Integrative analysis of transcriptomic and proteomic data of Shewanella oneidensis: missing value imputation using temporal datasets.

6 July 2018

1 reference

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Global gene expression patterns in Clostridium thermocellum as determined by microarray analysis of chemostat cultures on cellulose or cellobiose.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Deletion of the Cel48S cellulase from Clostridium thermocellum.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Development of pyrF-based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta mutant

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

The surprising diversity of clostridial hydrogenases: a comparative genomic perspective

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Global gene expression in Staphylococcus aureus following exposure to alcohol

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Perspectives and new directions for the production of bioethanol using consolidated bioprocessing of lignocellulose

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Priming in systemic plant immunity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Third generation biofuels via direct cellulose fermentation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

STRING 8--a global view on proteins and their functional interactions in 630 organisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Operon prediction using both genome-specific and general genomic information

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Relationship Between Substrate Concentration and Fermentation Product Ratios in Clostridium thermocellum Cultures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Consolidated bioprocessing of cellulosic biomass: an update

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Cellulase, clostridia, and ethanol

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Compatible solutes protect against chaotrope (ethanol)-induced, nonosmotic water stress

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Microbial cellulose utilization: fundamentals and biotechnology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Ethanol tolerance in bacteria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Closing the carbon balance for fermentation by Clostridium thermocellum (ATCC 27405).

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Challenges in engineering microbes for biofuels production.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Engineering yeast transcription machinery for improved ethanol tolerance and production.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Proteomic profile changes in membranes of ethanol-tolerant Clostridium thermocellum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Analysis of composition and structure of Clostridium thermocellum membranes from wild-type and ethanol-adapted strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Functional asymmetry in cohesin binding belies inherent symmetry of the dockerin module: insight into cellulosome assembly revealed by systematic mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

The unique set of putative membrane-associated anti-sigma factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Growth phase-dependant enzyme profile of pyruvate catabolism and end-product formation in Clostridium thermocellum ATCC 27405.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Assessment of sampling strategies for gas chromatography-mass spectrometry (GC-MS) based metabolomics of cyanobacteria.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3478167

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

27 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-336

Quantification of Cell and Cellulase Mass Concentrations during Anaerobic Cellulose Fermentation: Development of an Enzyme-Linked Immunosorbent Assay-Based Method with Application toClostridiumthermocellumBatch Cultures

21 January 2018

1 reference

12 December 2020

Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum

1 reference

12 December 2020

Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum

1 reference

12 December 2020

Induction of major heat-shock proteins of Saccharomyces cerevisiae, including plasma membrane Hsp30, by ethanol levels above a critical threshold

1 reference

12 December 2020

Improved ethanol tolerance and production in strains of Clostridium thermocellum

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-13-336

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

PubMed publication ID

22823947

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22823947%20AND%20SRC:MED&resulttype=core&format=json