(Q34351341)

1 August 2017

The role of shape in determining molecular motions (English)

1 reference

1 August 2017

Mingyang Lu

1

1 reference

PubMed ID

16055547

1 August 2017

Jianpeng Ma

series ordinal

2

1 reference

PubMed ID

16055547

1 August 2017

language of work or name

English

0 references

publication date

29 July 2005

1 reference

1 August 2017

1 reference

1 August 2017

89

1 reference

1 August 2017

4

1 reference

1 August 2017

2395-2401

1 reference

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Comparison of mode analyses at different resolutions applied to nucleic acid systems

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

New advances in normal mode analysis of supermolecular complexes and applications to structural refinement

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Refinement of F-actin model against fiber diffraction data by long-range normal modes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Simulation of F-actin filaments of several microns

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantised elastic deformational model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Dynamics of proteins in crystals: comparison of experiment with simple models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

How to describe protein motion without amino acid sequence and atomic coordinates.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Domain movements in human fatty acid synthase by quantized elastic deformational model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Flexibility and packing in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Anisotropy of fluctuation dynamics of proteins with an elastic network model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Ligand-induced conformational changes in ras p21: a normal mode and energy minimization analysis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Deoxymyoglobin studied by the conformational normal mode analysis. I. Dynamics of globin and the heme-globin interaction.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Deoxymyoglobin studied by the conformational normal mode analysis. II. The conformational change upon oxygenation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Global ribosome motions revealed with elastic network model.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

A normal mode analysis of structural plasticity in the biomolecular motor F(1)-ATPase.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Experimental verification of conformational variation of human fatty acid synthase as predicted by normal mode analysis.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Functional motions can be extracted from on‐lattice construction of protein structures

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

The origin and extent of coarse-grained regularities in protein internal packing.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Conformational flexibility of pyruvate dehydrogenase complexes: a computational analysis by quantized elastic deformational model

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Molecular mechanisms of chaperonin GroEL-GroES function

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Hinge-bending motion in citrate synthase arising from normal mode calculations.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Analysis of the low frequency normal modes of the T-state of aspartate transcarbamylase.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366739

Tertiary and quaternary conformational changes in aspartate transcarbamylase: a normal mode study

27 October 2018

1 reference

12 December 2020

Mega-Dalton Biomolecular Motion Captured from Electron Microscopy Reconstructions

1 reference

12 December 2020

Accessing information on the conformational flexibility of molecular machines

1 reference

12 December 2020

Analysis of the low-frequency normal modes of the R state of aspartate transcarbamylase and a comparison with the T state modes

1 reference

12 December 2020

The hinge-bending mode in lysozyme

1 reference

12 December 2020

10.1529/BIOPHYSJ.105.065904

Identifiers

DOI

1 reference

1 August 2017

1 reference

1 August 2017

1 reference

PubMed ID

16055547