(Q34361771)

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Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection

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Europe PubMed Central

PubMed publication ID

1 August 2017

Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection (English)

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

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single-nucleotide polymorphism

1 reference

based on heuristic

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Eucalyptus camaldulensis

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Eucalyptus camaldulensis

1 reference

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inferred from title

author name string

Bala R Thumma

1

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Navin Sharma

2

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Europe PubMed Central

PubMed publication ID

1 August 2017

Simon G Southerton

3

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Europe PubMed Central

PubMed publication ID

1 August 2017

language of work or name

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publication date

1 August 2012

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Europe PubMed Central

PubMed publication ID

1 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

13

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Europe PubMed Central

PubMed publication ID

1 August 2017

364

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

describes a project that uses

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DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Patterns of positive selection and neutral evolution in the protein-coding genes of Tetraodon and Takifugu

1 reference

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6 July 2018

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

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6 July 2018

Integrative genomics viewer

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6 July 2018

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq.

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6 July 2018

Differential expression analysis for sequence count data

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6 July 2018

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation

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6 July 2018

Genome-wide allele-specific analysis: insights into regulatory variation

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6 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

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Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations

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BEDTools: a flexible suite of utilities for comparing genomic features

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6 July 2018

Positive selection on apoptosis related genes

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6 July 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Identification of a Cis-acting regulatory polymorphism in a Eucalypt COBRA-like gene affecting cellulose content

1 reference

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6 July 2018

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

The Sequence Alignment/Map format and SAMtools

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

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6 July 2018

TopHat: discovering splice junctions with RNA-Seq

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6 July 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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6 July 2018

RNA-Seq: a revolutionary tool for transcriptomics

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6 July 2018

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6 July 2018

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Barley transcript profiles under dehydration shock and drought stress treatments: a comparative analysis

1 reference

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6 July 2018

Gene networks involved in drought stress response and tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Comparing regional transcript profiles from maize primary roots under well-watered and low water potential conditions

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Role of DREB transcription factors in abiotic and biotic stress tolerance in plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

A genome-wide survey of R gene polymorphisms in Arabidopsis

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6 July 2018

A scan for positively selected genes in the genomes of humans and chimpanzees

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6 July 2018

NAC transcription factors: structurally distinct, functionally diverse

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6 July 2018

Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Cis-acting regulatory variation in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

Regulatory network of gene expression in the drought and cold stress responses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472208

6 July 2018

GoMiner: a resource for biological interpretation of genomic and proteomic data

1 reference

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6 July 2018

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1 reference

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6 July 2018

bZIP transcription factors in Arabidopsis

1 reference

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1 reference

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Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-364

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1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-364

21 January 2018

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1 reference

https://pubmed.ncbi.nlm.nih.gov/22853646

12 December 2020

based on heuristic

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Mapping common regulatory variants to human haplotypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22853646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-13-364

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

ResearchGate publication ID

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