(Q34362504)

English

Contribution of the intercalated adenosine at the helical junction to the stability of the gag-pro frameshifting pseudoknot from mouse mammary tumor virus

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5 November 2019

Contribution of the intercalated adenosine at the helical junction to the stability of the gag-pro frameshifting pseudoknot from mouse mammary tumor virus (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10744025%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

Mouse mammary tumor virus

object named as

mouse mammary tumor virus

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inferred from title

David P. Giedroc

2

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5 November 2019

author name string

C A Theimer

1

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5 November 2019

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publication date

1 March 2000

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5 November 2019

1 reference

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5 November 2019

6

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5 November 2019

409-421

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5 November 2019

3

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Europe PubMed Central

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5 November 2019

Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudoknot

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Structural studies of the RNA pseudoknot required for readthrough of the gag-termination codon of murine leukemia virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Ion-RNA interactions in the RNA pseudoknot of a ribosomal frameshifting site: molecular modeling studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Mutational analysis of the RNA pseudoknot involved in efficient ribosomal frameshifting in simian retrovirus-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

RNA seeing double: close-packing of helices in RNA tertiary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

An NMR and mutational study of the pseudoknot within the gene 32 mRNA of bacteriophage T2: insights into a family of structurally related RNA pseudoknots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Thermodynamics of RNA folding in a conserved ribosomal RNA domain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Conformation of an RNA pseudoknot

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

6 July 2018

Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

27 October 2018

Equilibrium unfolding pathway of an H-type RNA pseudoknot which promotes programmed -1 ribosomal frameshifting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

27 October 2018

An approximation of loop free energy values of RNA H-pseudoknots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

27 October 2018

Thermodynamics of folding of the RNA pseudoknot of the T4 gene 32 autoregulatory messenger RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

27 October 2018

Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

27 October 2018

RNA pseudoknots. Stability and loop size requirements.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369923

27 October 2018

Energetics of a strongly pH dependent RNA tertiary structure in a frameshifting pseudoknot

1 reference

https://pubmed.ncbi.nlm.nih.gov/10744025

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of the autoregulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: a model for a possible family of structurally related RNA pseudoknots

1 reference

https://pubmed.ncbi.nlm.nih.gov/10744025

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-pairings within the RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site

1 reference

https://pubmed.ncbi.nlm.nih.gov/10744025

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/10744025

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-nearest neighbor effects on the thermodynamics of unfolding of a model mRNA pseudoknot

1 reference

https://pubmed.ncbi.nlm.nih.gov/10744025

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/10744025

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Equilibrium unfolding (folding) pathway of a model H-type pseudoknotted RNA: the role of magnesium ions in stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/10744025

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamics of stabilization of RNA pseudoknots by cobalt(III) hexaammine

1 reference

https://pubmed.ncbi.nlm.nih.gov/10744025

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1017/S1355838200992057

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10744025%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10744025%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10744025%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

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