(Q34392527)

24903516

1 August 2017

title

Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12. (English)

1 reference

24903516

1 August 2017

main subject

Escherichia coli K-12

0 references

author

Fabio Rinaldi

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Alberto Santos-Zavaleta

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Julio Collado-Vides

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1

Socorro Gama-Castro

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

author name string

Alejandra López-Fuentes

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Yalbi Itzel Balderas-Martínez

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Simon Clematide

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Tilia Renate Ellendorff

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Hernani Marques-Madeira

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

language of work or name

1 reference

4 June 2014

1 reference

1 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

7 June 2020

cites work

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6 July 2018

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Using the OntoGene pipeline for the triage task of BioCreative 2012.

6 July 2018

1 reference

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Evidence classification of high-throughput protocols and confidence integration in RegulonDB.

6 July 2018

1 reference

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RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.

6 July 2018

1 reference

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EcoCyc: fusing model organism databases with systems biology

6 July 2018

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Endogenous protein S-Nitrosylation in E. coli: regulation by OxyR.

6 July 2018

1 reference

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Using ODIN for a PharmGKB revalidation experiment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis

6 July 2018

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OntoGene in BioCreative II

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Induction of the sufA operon encoding Fe-S assembly proteins by superoxide generators and hydrogen peroxide: involvement of OxyR, IHF and an unidentified oxidant-responsive factor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Phase variation of Ag43 is independent of the oxidation state of OxyR.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Computation-directed identification of OxyR DNA binding sites in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

OxyR and SoxRS regulation of fur

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

RegulonDB: a database on transcriptional regulation in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Transcriptional regulation of the Escherichia coli oxyR gene as a function of cell growth

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Homeostatic regulation of intracellular hydrogen peroxide concentration in aerobically growing Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: a mechanism for differential promoter selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Mutational analysis of the redox-sensitive transcriptional regulator OxyR: regions important for oxidation and transcriptional activation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Nucleotide sequence of katG, encoding catalase HPI of Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Identification and molecular analysis of oxyR-regulated promoters important for the bacterial adaptation to oxidative stress

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Transcriptional regulator of oxidative stress-inducible genes: direct activation by oxidation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

Multidegenerate DNA recognition by the OxyR transcriptional regulator

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207228

The Escherichia coli yhjA gene, encoding a predicted cytochrome c peroxidase, is regulated by FNR and OxyR.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU049

The dps promoter is activated by OxyR during growth and by IHF and σs in stationary phase

21 January 2018

2 references

Crossref

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU049

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/24903516

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Purification and characterization of the Escherichia coli OxyR protein, the positive regulator for a hydrogen peroxide-inducible regulon

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24903516

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DATABASE/BAU049

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

24903516

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24903516%20AND%20SRC:MED&resulttype=core&format=json