(Q34401323)

1 August 2017

title

ChIPing the cistrome of PXR in mouse liver (English)

1 reference

1 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

18 June 2024

3

Cheryl E. Rockwell

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

18 June 2024

author name string

Julia Yue Cui

1

1 reference

1 August 2017

Sumedha S. Gunewardena

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

18 June 2024

Curtis D. Klaassen

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

18 June 2024

language of work or name

English

0 references

publication date

6 August 2010

1 reference

full work available at URL

1 August 2017

https://doi.org/10.1093/nar/gkq654

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20693526/pdf/?tool=EBI

18 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

http://nar.oxfordjournals.org/cgi/content/full/38/22/7943

18 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

http://nar.oxfordjournals.org/cgi/reprint/38/22/7943.pdf

18 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

http://nar.oxfordjournals.org/cgi/content/abstract/38/22/7943

18 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20693526/?tool=EBI

18 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

https://europepmc.org/articles/PMC3001051

18 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

https://europepmc.org/articles/PMC3001051?pdf=render

18 June 2024

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20693526

http://academic.oup.com/nar/article-pdf/38/22/7943/18783579/gkq654.pdf

18 June 2024

https://api.crossref.org/works/10.1093/NAR/GKQ654

1 reference

18 June 2024

published in

Nucleic Acids Research

1 reference

1 August 2017

volume

38

1 reference

1 August 2017

issue

22

1 reference

1 August 2017

page(s)

7943-7963

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

1 August 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Ontogenic expression of hepatic Ahr mRNA is associated with histone H3K4 di-methylation during mouse liver development

6 July 2018

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ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

6 July 2018

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Dynamic patterns of histone methylation are associated with ontogenic expression of the Cyp3a genes during mouse liver maturation

6 July 2018

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Identification of pregnane-X receptor target genes and coactivator and corepressor binding to promoter elements in human hepatocytes

6 July 2018

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ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

6 July 2018

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A regulatory module embedded in the coding region of Hoxa2 controls expression in rhombomere 2

6 July 2018

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Design and analysis of ChIP-seq experiments for DNA-binding proteins

6 July 2018

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An integrated software system for analyzing ChIP-chip and ChIP-seq data

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Tissue distribution, gender-divergent expression, ontogeny, and chemical induction of multidrug resistance transporter genes (Mdr1a, Mdr1b, Mdr2) in mice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Model-based analysis of ChIP-Seq (MACS)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Active nuclear receptors exhibit highly correlated AF-2 domain motions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Construction and characterization of a fully active PXR/SRC-1 tethered protein with increased stability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Gene regulation in the third dimension

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Hepatic fatty acid transporter Cd36 is a common target of LXR, PXR, and PPARgamma in promoting steatosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

High-resolution profiling of histone methylations in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

The flame retardants, polybrominated diphenyl ethers, are pregnane X receptor activators

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

International Union of Pharmacology. LXII. The NR1H and NR1I receptors: constitutive androstane receptor, pregnene X receptor, farnesoid X receptor alpha, farnesoid X receptor beta, liver X receptor alpha, liver X receptor beta, and vitamin D recept

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Identification of genes controlled by the pregnane X receptor by microarray analysis of mRNAs from pregnenolone 16alpha-carbonitrile-treated rats

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Human PXR forms a tryptophan zipper-mediated homodimer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

A novel pregnane X receptor-mediated and sterol regulatory element-binding protein-independent lipogenic pathway

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Drug metabolism and variability among patients in drug response

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Assessing computational tools for the discovery of transcription factor binding sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Bioconductor: open software development for computational biology and bioinformatics

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

The nuclear pregnane X receptor: a key regulator of xenobiotic metabolism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

DNA methylation patterns and epigenetic memory

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Induction profile of rat organic anion transporting polypeptide 2 (oatp2) by prototypical drug-metabolizing enzyme inducers that activate gene expression through ligand-activated transcription factor pathways

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

The orphan nuclear receptor SXR coordinately regulates drug metabolism and efflux

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Nuclear receptor response elements mediate induction of intestinal MDR1 by rifampin

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

The nuclear receptor PXR is a lithocholic acid sensor that protects against liver toxicity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

An orphan nuclear receptor activated by pregnanes defines a novel steroid signaling pathway

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Coordinate positioning of MEF2 and myogenin binding sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

Mutations in the first intron of the SHR renin gene disrupt putative regulatory elements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

An E box in the desmin promoter cooperates with the E box and MEF-2 sites of a distal enhancer to direct muscle-specific transcription.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001051

A hybrid model for robust detection of transcription factor binding sites

6 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Induction of the multidrug resistance-associated protein family of transporters by chemical activators of receptor-mediated pathways in mouse liver

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Regulation of mouse organic anion-transporting polypeptides (Oatps) in liver by prototypical microsomal enzyme inducers that activate distinct transcription factor pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Tissue distribution, ontogeny, and regulation of aldehyde dehydrogenase (Aldh) enzymes mRNA by prototypical microsomal enzyme inducers in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Importance of hepatic induction of constitutive androstane receptor and other transcription factors that regulate xenobiotic metabolism and transport.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Prediction of nuclear hormone receptor response elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Induction of rat organic anion transporting polypeptide 2 by pregnenolone-16alpha-carbonitrile is via interaction with pregnane X receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Mechanism of rifampicin and pregnane X receptor inhibition of human cholesterol 7 alpha-hydroxylase gene transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Identification of negative regulatory regions within the first exon and intron of the BCL6 gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Orphan nuclear receptor pregnane X receptor sensitizes oxidative stress responses in transgenic mice and cancerous cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Helical periodicity of DNA determined by enzyme digestion

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ654

Transcription regulation of the PDGF A-chain gene by first intron elements

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20693526

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Two-stage glucocorticoid induction of CYP3A23 through both the glucocorticoid and pregnane X receptors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20693526

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of DNA methylation and histone modification profiles of liver-specific transporters

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20693526

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The value of prior knowledge in discovering motifs with MEME

https://api.crossref.org/works/10.1093/NAR/GKQ654

6

1 reference

18 June 2024

Identifiers

DOI

10.1093/NAR/GKQ654

1 reference

1 August 2017

1 reference

1 August 2017

1 reference