(Q34405876)

English

Metabolic erosion primarily through mutation accumulation, and not tradeoffs, drives limited evolution of substrate specificity in Escherichia coli

scientific article

In more languages

default for all languages

No label defined

No description defined

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Metabolic erosion primarily through mutation accumulation, and not tradeoffs, drives limited evolution of substrate specificity in Escherichia coli (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Escherichia coli

0 references

author name string

Nicholas Leiby

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Christopher J Marx

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

language of work or name

0 references

publication date

18 February 2014

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

e1001789

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

copyright license

Creative Commons Attribution 4.0 International

18 February 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Normal mutation rate variants arise in a Mutator (Mut S) Escherichia coli population.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

The ability of flux balance analysis to predict evolution of central metabolism scales with the initial distance to the optimum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Development of an optimized medium, strain and high-throughput culturing methods for Methylobacterium extorquens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

The environment affects epistatic interactions to alter the topology of an empirical fitness landscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Understanding specialism when the Jack of all trades can be the master of all.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Clarity: an open-source manager for laboratory automation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Genomic analysis of a key innovation in an experimental Escherichia coli population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Multiple long-term, experimentally-evolved populations of Escherichia coli acquire dependence upon citrate as an iron chelator for optimal growth on glucose

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Repeated, selection-driven genome reduction of accessory genes in experimental populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

What is flux balance analysis?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Genome evolution and adaptation in a long-term experiment with Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Death and cannibalism in a seasonal environment facilitate bacterial coexistence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

The stability effects of protein mutations appear to be universally distributed

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Tests of parallel molecular evolution in a long-term experiment with Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Missense meanderings in sequence space: a biophysical view of protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Long-term experimental evolution in Escherichia coli. XIII. Phylogenetic history of a balanced polymorphism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Thermodynamic prediction of protein neutrality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Epistasis and its relationship to canalization in the RNA virus phi 6.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Long-term experimental evolution in Escherichia coli. XI. Rejection of non-transitive interactions as cause of declining rate of adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Genetic hitchhiking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

The population genetics of ecological specialization in evolving Escherichia coli populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

The consequences of growth of a mutator strain of Escherichia coli as measured by loss of function among multiple gene targets and loss of fitness

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Long-Term Experimental Evolution in Escherichia coli. VIII. Dynamics of a Balanced Polymorphism

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

9 December 2018

Evolution of high mutation rates in experimental populations of E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

High mutation frequencies among Escherichia coli and Salmonella pathogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Long-term experimental evolution in Escherichia coli. IV. Targets of selection and the specificity of adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Muller's ratchet decreases fitness of a DNA-based microbe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

The hitch-hiking effect of a favourable gene

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

https://pubmed.ncbi.nlm.nih.gov/24558347

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

6 July 2018

Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

LONG-TERM EXPERIMENTAL EVOLUTION IN ESCHERICHIA COLI. III. VARIATION AMONG REPLICATE POPULATIONS IN CORRELATED RESPONSES TO NOVEL ENVIRONMENTS.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

Negative epistasis between beneficial mutations in an evolving bacterial population

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

Asymmetric, bimodal trade-offs during adaptation of Methylobacterium to distinct growth substrates.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

A latent capacity for evolutionary innovation through exaptation in metabolic systems

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

Adaptive radiation in a heterogeneous environment

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

Sign epistasis limits evolutionary trade-offs at the confluence of single- and multi-carbon metabolism in Methylobacterium extorquens AM1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

27 October 2018

Parallel changes in host resistance to viral infection during 45,000 generations of relaxed selection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

27 October 2018

Experimental tests for an evolutionary trade-off between growth rate and yield in E. coli.

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

27 October 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

9 December 2018

Pleiotropic effects of beneficial mutations in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928024

27 October 2018

Long-Term Experimental Evolution in Escherichia coli. II. Changes in Life-History Traits During Adaptation to a Seasonal Environment

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001789

21 January 2018

A negative relationship between mutation pleiotropy and fitness effect in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/24558347

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of low mutation rates in experimental mutator populations of Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/24558347

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

COMPETITION BETWEEN HIGH AND LOW MUTATING STRAINS OF ESCHERICHIA COLI

1 reference

https://pubmed.ncbi.nlm.nih.gov/24558347

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PBIO.1001789

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34405876&oldid=1959838612"