(Q34410000)

English

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

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scholarly article

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Europe PubMed Central

PubMed publication ID

2 August 2017

Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

assisted evolution

1 reference

based on heuristic

inferred from title

Leptosphaeria maculans

object named as

Leptosphaeria maculans

1 reference

based on heuristic

inferred from title

12

object named as

Valérie Barbe

0 references

Sophie Mangenot

13

object named as

Sophie Mangenot

0 references

Jonathan Grandaubert

object named as

Jonathan Grandaubert

1

0 references

object named as

Hossein Borhan

15

0 references

Angela P Van de Wouw

object named as

Angela P Van de Wouw

5

0 references

14

object named as

Corinne Cruaud

1 reference

Europe PubMed Central

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2 August 2017

Barbara Jane Howlett

16

object named as

Barbara J Howlett

1 reference

Europe PubMed Central

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2 August 2017

2

object named as

Rohan G T Lowe

1 reference

Europe PubMed Central

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2 August 2017

Conrad Lamoraal Schoch

4

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Conrad L Schoch

1 reference

Europe PubMed Central

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2 August 2017

object named as

Isabelle Fudal

6

1 reference

ORCID Public Data File 2021

author name string

Jessica L Soyer

3

1 reference

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2 August 2017

Barbara Robbertse

7

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Europe PubMed Central

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2 August 2017

Nicolas Lapalu

8

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Matthew G Links

9

1 reference

Europe PubMed Central

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2 August 2017

Bénédicte Ollivier

10

1 reference

Europe PubMed Central

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2 August 2017

Juliette Linglin

11

1 reference

Europe PubMed Central

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2 August 2017

Marie-Hélène Balesdent

17

1 reference

Europe PubMed Central

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2 August 2017

Thierry Rouxel

18

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2 August 2017

language of work or name

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publication date

12 October 2014

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Europe PubMed Central

PubMed publication ID

2 August 2017

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Europe PubMed Central

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2 August 2017

15

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Europe PubMed Central

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2 August 2017

891

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2 August 2017

describes a project that uses

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-891

0 references

Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans.

1 reference

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6 July 2018

Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Widespread horizontal transfer of retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi

1 reference

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6 July 2018

The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry

1 reference

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6 July 2018

Genome structure and reproductive behaviour influence the evolutionary potential of a fungal phytopathogen.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

1 reference

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6 July 2018

Genome evolution in filamentous plant pathogens: why bigger can be better

1 reference

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6 July 2018

Bayesian phylogenetics with BEAUti and the BEAST 1.7

1 reference

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6 July 2018

InterPro in 2011: new developments in the family and domain prediction database

1 reference

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6 July 2018

Zymoseptoria gen. nov.: a new genus to accommodate Septoria-like species occurring on graminicolous hosts

1 reference

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Rock-inhabiting fungi originated during periods of dry climate in the late Devonian and middle Triassic

1 reference

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6 July 2018

Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species

1 reference

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6 July 2018

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.

1 reference

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6 July 2018

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

1 reference

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6 July 2018

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Considering transposable element diversification in de novo annotation approaches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

CDD: a Conserved Domain Database for the functional annotation of proteins

1 reference

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6 July 2018

In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Evolution of linked avirulence effectors in Leptosphaeria maculans is affected by genomic environment and exposure to resistance genes in host plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Using the Generic Synteny Browser (GBrowse_syn)

1 reference

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6 July 2018

The stem canker (blackleg) fungus, Leptosphaeria maculans, enters the genomic era.

1 reference

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6 July 2018

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

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6 July 2018

FastTree 2--approximately maximum-likelihood trees for large alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Unravelling Mycosphaerella: do you believe in genera?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

A class-wide phylogenetic assessment of Dothideomycetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Jumping genes and epigenetics: Towards new species

1 reference

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6 July 2018

The transposon Galileo generates natural chromosomal inversions in Drosophila by ectopic recombination.

1 reference

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6 July 2018

Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives

1 reference

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6 July 2018

Repeat-induced point mutation (RIP) as an alternative mechanism of evolution toward virulence in Leptosphaeria maculans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

TopHat: discovering splice junctions with RNA-Seq

1 reference

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6 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

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6 July 2018

Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum

1 reference

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6 July 2018

A unified classification system for eukaryotic transposable elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes

1 reference

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6 July 2018

Clustal W and Clustal X version 2.0

1 reference

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6 July 2018

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

1 reference

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6 July 2018

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

1 reference

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6 July 2018

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

1 reference

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6 July 2018

Emergence of a new disease as a result of interspecific virulence gene transfer

1 reference

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6 July 2018

Coexistence of related pathogen species on arable crops in space and time

1 reference

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6 July 2018

Gene identification in novel eukaryotic genomes by self-training algorithm

1 reference

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6 July 2018

Repbase Update, a database of eukaryotic repetitive elements

1 reference

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6 July 2018

InterProScan: protein domains identifier

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

The genome sequence of the rice blast fungus Magnaporthe grisea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

RIP: the evolutionary cost of genome defense

1 reference

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6 July 2018

Improved prediction of signal peptides: SignalP 3.0

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6 July 2018

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6 July 2018

Factors that affect the horizontal transfer of transposable elements.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Transposable Elements in Filamentous Fungi

1 reference

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6 July 2018

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

1 reference

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6 July 2018

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

Viewing and annotating sequence data with Artemis

1 reference

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6 July 2018

Analysis of loss of pathogenicity mutants reveals that repeat-induced point mutations can occur in the Dothideomycete Leptosphaeria maculans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210507

6 July 2018

The genome sequence of the filamentous fungus Neurospora crassa

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6 July 2018

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

1 reference

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6 July 2018

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

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6 July 2018

The evolution of isochores

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6 July 2018

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

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6 July 2018

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

1 reference

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6 July 2018

EMBOSS: the European Molecular Biology Open Software Suite

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6 July 2018

Ab initio gene finding in Drosophila genomic DNA

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6 July 2018

Life with 6000 genes

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6 July 2018

Methylation of DNA repeats of decreasing sizes in Ascobolus immersus

1 reference

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6 July 2018

Basic local alignment search tool

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6 July 2018

Leptosphaeria maculans avirulence gene AvrLm4-7 confers a dual recognition specificity by the Rlm4 and Rlm7 resistance genes of oilseed rape, and circumvents Rlm4-mediated recognition through a single amino acid change.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-891

21 January 2018

The dispensable chromosome of Leptosphaeria maculans shelters an effector gene conferring avirulence towards Brassica rapa.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-891

21 January 2018

Genome structure impacts molecular evolution at the AvrLm1 avirulence locus of the plant pathogen Leptosphaeria maculans

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-891

21 January 2018

The sirodesmin biosynthetic gene cluster of the plant pathogenic fungus Leptosphaeria maculans

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-891

21 January 2018

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph

1 reference

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21 January 2018

Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-891

21 January 2018

Recovering genome rearrangements in the mammalian phylogeny

1 reference

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21 January 2018

A universal classification of eukaryotic transposable elements implemented in Repbase.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-891

21 January 2018

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

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https://api.crossref.org/works/10.1186%2F1471-2164-15-891

21 January 2018

ANAIS: analysis of NimbleGen arrays interface

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21 January 2018

Aligning multiple whole genomes with Mercator and MAVID.

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27 October 2018

Heterochromatin-like regions as ecological niches for avirulence genes in the Leptosphaeria maculans genome: map-based cloning of AvrLm6.

1 reference

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27 October 2018

Lost in the middle of nowhere: the AvrLm1 avirulence gene of the Dothideomycete Leptosphaeria maculans.

1 reference

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27 October 2018

Molecular phylogeny of the Leptosphaeria maculans-L. biglobosa species complex

1 reference

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27 October 2018

The PWL host specificity gene family in the blast fungus Magnaporthe grisea.

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27 October 2018

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

1 reference

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21 January 2018

Phylogenetic relationships between members of the crucifer pathogenic Leptosphaeria maculans species complex as shown by mating type (MAT1-2), actin, and beta-tubulin sequences

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mycology. Attack of the clones

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https://pubmed.ncbi.nlm.nih.gov/25306241

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Occurrence of a new subclade of Leptosphaeria biglobosa in Western Australia

1 reference

https://pubmed.ncbi.nlm.nih.gov/25306241

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Revisiting horizontal transfer of transposable elements in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/25306241

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire

1 reference

https://pubmed.ncbi.nlm.nih.gov/25306241

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-15-891

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

0 references

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