(Q34426393)

2 August 2017

title

Coupling between catalytic loop motions and enzyme global dynamics (English)

1 reference

2 August 2017

4

Ivet Bahar

0 references

Pemra Doruker

series ordinal

5

object named as

Pemra Doruker

1 reference

2 August 2017

Zeynep Kurkcuoglu

1

1 reference

2 August 2017

Ahmet Bakan

series ordinal

2

1 reference

2 August 2017

Duygu Kocaman

series ordinal

3

1 reference

2 August 2017

publication date

27 September 2012

1 reference

PLOS Computational Biology

2 August 2017

published in

1 reference

2 August 2017

volume

8

1 reference

2 August 2017

issue

9

1 reference

2 August 2017

page(s)

e1002705

1 reference

Creative Commons Attribution 4.0 International

2 August 2017

copyright license

start time

27 September 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis

6 July 2018

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6 July 2018

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Global dynamics of proteins: bridging between structure and function

6 July 2018

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6 July 2018

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The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding

6 July 2018

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6 July 2018

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Close correspondence between the motions from principal component analysis of multiple HIV-1 protease structures and elastic network modes

6 July 2018

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Intrinsic motions along an enzymatic reaction trajectory

6 July 2018

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Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics

6 July 2018

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Electrostatic basis for enzyme catalysis

6 July 2018

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6 July 2018

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Low-frequency normal mode in DNA HhaI methyltransferase and motions of residues involved in the base flipping

6 July 2018

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Scalable molecular dynamics with NAMD

6 July 2018

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6 July 2018

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Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes

6 July 2018

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A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

6 July 2018

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A perspective on enzyme catalysis.

6 July 2018

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Molecular dynamic study of orotidine-5'-monophosphate decarboxylase in ground state and in intermediate state: a role of the 203-218 loop dynamics

6 July 2018

1 reference

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Network of coupled promoting motions in enzyme catalysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Conformational change of proteins arising from normal mode calculations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Anisotropy of fluctuation dynamics of proteins with an elastic network model

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Anatomy of a proficient enzyme: The structure of orotidine 5'-monophosphate decarboxylase in the presence and absence of a potential transition state analog

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

6 July 2018

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Structure of a binary complex of HhaI methyltransferase with S-adenosyl-L-methionine formed in the presence of a short non-specific DNA oligonucleotide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Rapid loop dynamics of Yersinia protein tyrosine phosphatases.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

A ligand-induced conformational change in the Yersinia protein tyrosine phosphatase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

HhaI methyltransferase flips its target base out of the DNA helix

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Essential dynamics of proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Crystal structure of Yersinia protein tyrosine phosphatase at 2.5 A and the complex with tungstate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Dynamics of the flexible loop of triosephosphate isomerase: the loop motion is not ligand gated

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Dimerization affects collective dynamics of triosephosphate isomerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

A molecular dynamics study of WPD-loop flexibility in PTP1B.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

A targeted molecular dynamics study of WPD loop movement in PTP1B.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Loop motions of triosephosphate isomerase observed with elastic networks.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Triggering loops and enzyme function: identification of loops that trigger and modulate movements

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to alpha-amylase inhibitor

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3459879

10.1371/JOURNAL.PCBI.1002705

27 October 2018

Identifiers

DOI

1 reference

journals/ploscb/KurkcuogluBKBD12

2 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 August 2017

1 reference