(Q34460049)

2 August 2017

title

Binding interactions between the core central domain of 16S rRNA and the ribosomal protein S15 determined by molecular dynamics simulations (English)

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2 August 2017

2

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2 August 2017

Wen Li

1

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2 August 2017

Bruce A Shapiro

series ordinal

3

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2 August 2017

language of work or name

English

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publication date

1 January 2003

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2 August 2017

published in

Nucleic Acids Research

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2 August 2017

volume

31

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2 August 2017

issue

2

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2 August 2017

page(s)

629-638

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describes a project that uses

2 August 2017

molecular dynamics simulation

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Atomic structures at last: the ribosome in 2000.

inferred from title

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140513

Formation of a GNRA tetraloop in P5abc can disrupt an interdomain interaction in the Tetrahymena group I ribozyme

6 July 2018

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Role of conserved nucleotides in building the 16 S rRNA binding site for ribosomal protein S15.

6 July 2018

1 reference

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Generalized born models of macromolecular solvation effects

6 July 2018

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Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

6 July 2018

1 reference

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Structure of the 30S ribosomal subunit

6 July 2018

1 reference

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The structural basis of ribosome activity in peptide bond synthesis

6 July 2018

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

6 July 2018

1 reference

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Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain

6 July 2018

1 reference

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A hierarchy of RNA subdomains in assembly of the central domain of the 30 S ribosomal subunit

6 July 2018

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6 July 2018

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Themes in RNA-protein recognition.

6 July 2018

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Ligand-induced conformational changes observed in single RNA molecules

6 July 2018

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Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results

6 July 2018

1 reference

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Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15

6 July 2018

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Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data.

6 July 2018

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In vitro assembly of a ribonucleoprotein particle corresponding to the platform domain of the 30S ribosomal subunit

6 July 2018

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Protein hinge bending as seen in molecular dynamics simulations of native and M61 mutant T4 lysozymes

6 July 2018

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The 16S rRNA binding site of Thermus thermophilus ribosomal protein S15: comparison with Escherichia coli S15, minimum site and structure

6 July 2018

1 reference

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Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site

6 July 2018

1 reference

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Strategies for RNA folding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140513

Molecular dynamics simulations of the denaturation and refolding of an RNA tetraloop

6 July 2018

1 reference

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Molecular dynamics and continuum solvent studies of the stability of polyG-polyC and polyA-polyT DNA duplexes in solution.

27 October 2018

1 reference

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Protein and Mg(2+)-induced conformational changes in the S15 binding site of 16 S ribosomal RNA

27 October 2018

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12 December 2020

Continuum solvent studies of the stability of RNA hairpin loops and helices

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12 December 2020

Theory and applications of the generalized Born solvation model in macromolecular simulations

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12 December 2020

Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG149

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2 August 2017

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2 August 2017

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