(Q34464555)

2 August 2017

title

MC3: a steady-state model and constraint consistency checker for biochemical networks (English)

1 reference

2 August 2017

4

Soha Hassoun

1 reference

2 August 2017

Mona Yousofshahi

1

1 reference

2 August 2017

Ehsan Ullah

series ordinal

2

1 reference

2 August 2017

Russell Stern

series ordinal

3

1 reference

2 August 2017

publication date

21 November 2013

1 reference

2 August 2017

1 reference

2 August 2017

volume

7

1 reference

2 August 2017

page(s)

129

1 reference

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.

2 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Reconciliation of metabolites and biochemical reactions for metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

High-throughput generation, optimization and analysis of genome-scale metabolic models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Metabolic flux analysis in mammalian cell culture

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Reconstruction of biochemical networks in microorganisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Decomposition of complex microbial behaviors into resource-based stress responses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Co-regulation of metabolic genes is better explained by flux coupling than by network distance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Structural and functional analysis of cellular networks with CellNetAnalyzer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Flux profile and modularity analysis of time-dependent metabolic changes of de novo adipocyte formation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Flux coupling analysis of genome-scale metabolic network reconstructions.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Thirteen years of building constraint-based in silico models of Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Metabolic network structure determines key aspects of functionality and regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Dynamic flux balance analysis of diauxic growth in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Energy balance for analysis of complex metabolic networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

Fat synthesis in adipose tissue. An examination of stoichiometric constraints

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222687

An improved algorithm for stoichiometric network analysis: theory and applications

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-129

Metabolic pathway structures for recombinant protein synthesis in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-129

An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-129

FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-129

METATOOL: for studying metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-129

SBMLToolbox: an SBML toolbox for MATLAB users

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24261865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Flux analysis of underdetermined metabolic networks: the quest for the missing constraints

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1186/1752-0509-7-129

Identifiers

DOI

10.1186/1752-0509-7-129

1 reference

journals/bmcsb/YousofshahiUSH13

2 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

2 August 2017

1 reference