(Q34470612)

25848958

2 August 2017

title

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe (English)

1 reference

2 August 2017

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Martin Sergeant

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Nicholas J. Loman

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Mark Pallen

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

3

Zhemin Zhou

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

12

Helen D Donoghue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

11

Mark Achtman

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Jacqueline Z-M Chan

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Andrew Millard

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Joshua Quick

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Ildikó Szikossy

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Ildikó Pap

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Mark Spigelman

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

language of work or name

English

0 references

publication date

7 April 2015

1 reference

25848958

2 August 2017

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

6717

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

8 June 2020

copyright license

start time

7 April 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

PolyTB: a genomic variation map for Mycobacterium tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Evolution and transmission of drug-resistant tuberculosis in a Russian population

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Osteological and biomolecular evidence of a 7000-year-old case of hypertrophic pulmonary osteopathy secondary to tuberculosis from neolithic hungary

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Population structure of mixed Mycobacterium tuberculosis infection is strain genotype and culture medium dependent

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Hidden Markov models for evolution and comparative genomics analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Rib lesions in skeletons from early neolithic sites in Central Germany: on the trail of tuberculosis at the onset of agriculture

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Fast gapped-read alignment with Bowtie 2

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Bayesian phylogenetics with BEAUti and the BEAST 1.7

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

An Inquiry into the Principal Causes of the Reduction in the Death-rate from Phthisis during the last Forty Years, with Special Reference to the Segregation of Phthisical Patients in General Institutions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

The Sequence Alignment/Map format and SAMtools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Detection and molecular characterization of 9,000-year-old Mycobacterium tuberculosis from a Neolithic settlement in the Eastern Mediterranean

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Variable host-pathogen compatibility in Mycobacterium tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Bayesian coalescent inference of past population dynamics from molecular sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Genotypic and phenotypic heterogeneity among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

APE: Analyses of Phylogenetics and Evolution in R language

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Inference of viral evolutionary rates from molecular sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Widespread occurrence of Mycobacterium tuberculosis DNA from 18th-19th century Hungarians

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Mycobacterium tuberculosis complex DNA from an extinct bison dated 17,000 years before the present

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Inferring the historical patterns of biological evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4396363

Insights into ancient leprosy and tuberculosis using metagenomics

6 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

Metagenomic analysis of tuberculosis in a mummy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

Genotyping of ancient Mycobacterium tuberculosis strains reveals historic genetic diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

Patients with active tuberculosis often have different strains in the same sputum specimen

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

Metagenomic analysis of tuberculosis--current limitations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

Molecular analysis of Mycobacterium tuberculosis DNA from a family of 18th century Hungarians.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

Molecular clues of a microepidemy among homeless tuberculosis patients in Budapest due to a new and local Mycobacterium tuberculosis clade

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS7717

Commentary: Medicine, population, and tuberculosis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25848958

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS7717

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

8 June 2020

ADS bibcode

2015NatCo...6.6717K

0 references

1038071297

0 references

Fatcat ID

release_agxwtpnd7bh2dcd4kbopsqdjk4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/agxwtpnd7bh2dcd4kbopsqdjk4

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

25848958

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25848958%20AND%20SRC:MED&resulttype=core&format=json