(Q33791955)

29 July 2017

title

PolyTB: a genomic variation map for Mycobacterium tuberculosis (English)

1 reference

Mycobacterium tuberculosis

29 July 2017

main subject

0 references

author

Arnab Pain

12

1 reference

29 July 2017

16

Taane G Clark

0 references

Francis Drobniewski

Francis Drobniewski

9

0 references

Mark D. Preston

Mark Preston

José Afonso Guerra-assunção

2

0 references

José Afonso Guerra-Assunção

3

0 references

João Perdigão

João Perdigão

6

0 references

Isabel Portugal

Isabel Portugal

8

0 references

Miguel Viveiros

Miguel Viveiros

7

0 references

Ruth McNerney

14

Ruth McNerney

1 reference

29 July 2017

13

Julian Parkhill

1 reference

29 July 2017

11

Judith R Glynn

1 reference

29 July 2017

10

Sebastien Gagneux

1 reference

29 July 2017

Francesc Coll

1

1 reference

29 July 2017

Grant Hill-Cawthorn

4

1 reference

29 July 2017

David Harris

5

1 reference

29 July 2017

Nigel Martin

15

1 reference

29 July 2017

Taane G Clark

16

1 reference

29 July 2017

publication date

15 February 2014

1 reference

29 July 2017

1 reference

29 July 2017

volume

94

1 reference

29 July 2017

issue

3

1 reference

29 July 2017

page(s)

346-354

1 reference

Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing

29 July 2017

cites work

1 reference

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4 July 2018

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Drug-resistant tuberculosis: time for visionary political leadership

4 July 2018

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Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

4 July 2018

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Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study

4 July 2018

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Database resources for the tuberculosis community

4 July 2018

1 reference

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Significance of the identification in the Horn of Africa of an exceptionally deep branching Mycobacterium tuberculosis clade

4 July 2018

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Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

4 July 2018

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Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database

4 July 2018

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Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

4 July 2018

1 reference

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SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

4 July 2018

1 reference

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DELLY: structural variant discovery by integrated paired-end and split-read analysis

4 July 2018

1 reference

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Combined species identification, genotyping, and drug resistance detection of Mycobacterium tuberculosis cultures by MLPA on a bead-based array

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Routine use of microbial whole genome sequencing in diagnostic and public health microbiology

4 July 2018

1 reference

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High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.

4 July 2018

1 reference

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High resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms

4 July 2018

1 reference

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Microevolution of extensively drug-resistant tuberculosis in Russia

4 July 2018

1 reference

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Mycobacterium tuberculosis--heterogeneity revealed through whole genome sequencing

4 July 2018

1 reference

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The real cost of sequencing: higher than you think!

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Genome structural variation discovery and genotyping

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

4 July 2018

1 reference

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CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Fast and accurate long-read alignment with Burrows-Wheeler transform

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

BLAST+: architecture and applications

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints

4 July 2018

1 reference

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

4 July 2018

1 reference

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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

The Sequence Alignment/Map format and SAMtools

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Tuberculosis drug resistance mutation database

4 July 2018

1 reference

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A rapid bootstrap algorithm for the RAxML Web servers

4 July 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP se

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Versatile and open software for comparing large genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

IS6110 based amplityping assay and RFLP fingerprinting of clinical isolates of Mycobacterium tuberculosis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

SITVITWEB--a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

DNA fingerprinting of Mycobacterium tuberculosis: from phage typing to whole-genome sequencing.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Web tools for molecular epidemiology of tuberculosis

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066953

Alignment of multiple complete genomes suggests that gene rearrangements may contribute towards the speciation of Mycobacteria

30 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.TUBE.2014.02.005

10.1016/J.TUBE.2014.02.005

7 January 2021

Identifiers

DOI

1 reference

release_5ly24wpqw5dzpojc6r7kcemg3i

29 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5ly24wpqw5dzpojc6r7kcemg3i

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4066953

1 reference

29 July 2017

1 reference