(Q34499321)

2 August 2017

Kinetics of amyloid aggregation: a study of the GNNQQNY prion sequence (English)

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2 August 2017

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2

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author name string

Jessica Nasica-Labouze

series ordinal

1

1 reference

2 August 2017

29 November 2012

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PLOS Computational Biology

2 August 2017

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2 August 2017

8

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2 August 2017

11

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2 August 2017

e1002782

1 reference

Creative Commons Attribution 4.0 International

2 August 2017

start time

29 November 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

A variational model for oligomer-formation process of GNNQQNY peptide from yeast prion protein Sup35

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Spontaneous formation of twisted Aβ(16-22) fibrils in large-scale molecular-dynamics simulations

7 July 2018

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Observation of spatial propagation of amyloid assembly from single nuclei

7 July 2018

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A multiscale approach to characterize the early aggregation steps of the amyloid-forming peptide GNNQQNY from the yeast prion sup-35

7 July 2018

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Environmental conditions affect the kinetics of nucleation of amyloid fibrils and determine their morphology

7 July 2018

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Structural characterization of GNNQQNY amyloid fibrils by magic angle spinning NMR

7 July 2018

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Hollow core of Alzheimer's Abeta42 amyloid observed by cryoEM is relevant at physiological pH.

7 July 2018

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Direct observation of nucleation and growth in amyloid self-assembly

7 July 2018

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GNNQQNY--investigation of early steps during amyloid formation

7 July 2018

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Mechanism of amyloidogenesis: nucleation-dependent fibrillation versus double-concerted fibrillation

7 July 2018

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Thermodynamic selection of steric zipper patterns in the amyloid cross-beta spine

7 July 2018

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Structural polymorphism of Alzheimer Abeta and other amyloid fibrils

7 July 2018

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Amyloid protofibrils of lysozyme nucleate and grow via oligomer fusion

7 July 2018

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Interprotofilament interactions between Alzheimer's Abeta1-42 peptides in amyloid fibrils revealed by cryoEM

7 July 2018

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Simulations of nucleation and elongation of amyloid fibrils

7 July 2018

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A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates

7 July 2018

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Systematic analysis of nucleation-dependent polymerization reveals new insights into the mechanism of amyloid self-assembly

7 July 2018

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EGCG redirects amyloidogenic polypeptides into unstructured, off-pathway oligomers

7 July 2018

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Investigating the mechanism of peptide aggregation: insights from mixed monte carlo-molecular dynamics simulations.

7 July 2018

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Structural reorganisation and potential toxicity of oligomeric species formed during the assembly of amyloid fibrils

7 July 2018

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A coarse-grained protein force field for folding and structure prediction.

7 July 2018

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Prion recognition elements govern nucleation, strain specificity and species barriers

7 July 2018

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Molecular dynamics simulations on the oligomer-formation process of the GNNQQNY peptide from yeast prion protein Sup35.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Atomic structures of amyloid cross-beta spines reveal varied steric zippers

7 July 2018

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Soluble protein oligomers in neurodegeneration: lessons from the Alzheimer's amyloid beta-peptide

7 July 2018

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Direct observation of amyloid fibril growth, propagation, and adaptation

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

The aggregation and fibrillation of alpha-synuclein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Protein misfolding, functional amyloid, and human disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Intermediate amyloid oligomers of lysozyme: Is their cytotoxicity a particular case or general rule for amyloid?

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Recent atomic models of amyloid fibril structure

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Exploring the early steps of amyloid peptide aggregation by computers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Structure of the cross-beta spine of amyloid-like fibrils

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

The aggregation kinetics of Alzheimer's beta-amyloid peptide is controlled by stochastic nucleation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Self-propagating, molecular-level polymorphism in Alzheimer's beta-amyloid fibrils

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Mechanism of prion propagation: amyloid growth occurs by monomer addition

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Sampling the self-assembly pathways of KFFE hexamers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Protein aggregation and neurodegenerative disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Unzipping the mysteries of amyloid fiber formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Rapid amyloid fiber formation from the fast-folding WW domain FBP28.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Amyloid beta -protein (Abeta) assembly: Abeta 40 and Abeta 42 oligomerize through distinct pathways

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Amyloid-fibril formation. Proposed mechanisms and relevance to conformational disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Evidence that the 127-164 region of prion proteins has two equi-energetic conformations with beta or alpha features

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

The assembly of amyloidogenic yeast sup35 as assessed by scanning (atomic) force microscopy: an analogy to linear colloidal aggregation?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Sampling activated mechanisms in proteins with the activation-relaxation technique.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated beta-sheet structure for amyloid

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Nucleated conformational conversion and the replication of conformational information by a prion determinant

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Alzheimer's disease amyloid propagation by a template-dependent dock-lock mechanism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Amyloid fibrillogenesis: themes and variations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Protein misfolding, evolution and disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

A critical role for amino-terminal glutamine/asparagine repeats in the formation and propagation of a yeast prion

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Knowledge-based protein secondary structure assignment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Kinetics of self-assembling microtubules: an "inverse problem" in biochemistry.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

On the nucleation and growth of amyloid beta-protein fibrils: detection of nuclei and quantitation of rate constants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Seeding "one-dimensional crystallization" of amyloid: a pathogenic mechanism in Alzheimer's disease and scrapie?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

The carboxy terminus of the beta amyloid protein is critical for the seeding of amyloid formation: implications for the pathogenesis of Alzheimer's disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

The structure and mechanism of formation of human calcitonin fibrils

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Conformation of Polypeptides and Proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Kinetics and Mechanism of Deoxyhemoglobin S Gelation: A New Approach to Understanding Sickle Cell Disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Kinetics of sickle hemoglobin polymerization. II. A double nucleation mechanism.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Kinetics of the cooperative association of actin to actin filament

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Characterization of the nucleation barriers for protein aggregation and amyloid formation

7 July 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Self-templated nucleation in peptide and protein aggregation.

21 January 2018

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Driving forces and structural determinants of steric zipper peptide oligomer formation elucidated by atomistic simulations.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Generating ensemble averages for small proteins from extended conformations by Monte Carlo simulations.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Complex folding pathways in a simple beta-hairpin

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Understanding the EF-hand closing pathway using non-biased interatomic potentials.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Effect of the disulfide bond on the monomeric structure of human amylin studied by combined Hamiltonian and temperature replica exchange molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Competing pathways determine fibril morphology in the self-assembly of beta2-microglobulin into amyloid.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Islet amyloid: phase partitioning and secondary nucleation are central to the mechanism of fibrillogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Time-dependent insulin oligomer reaction pathway prior to fibril formation: cooling and seeding

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Self-organization pathways and spatial heterogeneity in insulin amyloid fibril formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

One-dimensional model of yeast prion aggregation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Monte Carlo simulations of protein amyloid formation reveal origin of sigmoidal aggregation kinetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Amyloid-like features of polyglutamine aggregates and their assembly kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Finite-size effects in simulations of nucleation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Kinetic analysis of beta-amyloid fibril elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Assembly of amyloid protofibrils via critical oligomers--a novel pathway of amyloid formation

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Molecular dynamics with coupling to an external bath

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Sampling the complex energy landscape of a simple β-hairpin

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Coarse-grained protein molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Self-assembly of the beta2-microglobulin NHVTLSQ peptide using a coarse-grained protein model reveals a beta-barrel species

21 January 2018

2 references

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3510058

Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent

27 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Distinct Morphologies for Amyloid Beta Protein Monomer: Aβ1–40, Aβ1–42, and Aβ1–40(D23N)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Distinct Dimerization for Various Alloforms of the Amyloid-Beta Protein: Aβ1–40, Aβ1–42, and Aβ1–40(D23N)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Protofibrillar Assembly Toward the Formation of Amyloid Fibrils

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002782

Conversion of non-fibrillar beta-sheet oligomers into amyloid fibrils in Alzheimer's disease amyloid peptide aggregation

21 January 2018

1 reference

12 December 2020

The core Alzheimer's peptide NAC forms amyloid fibrils which seed and are seeded by beta-amyloid: is NAC a common trigger or target in neurodegenerative disease?

1 reference

12 December 2020

Multiple assembly pathways underlie amyloid-beta fibril polymorphisms

1 reference

12 December 2020

Amyloid fibril polymorphism is under kinetic control

1 reference

12 December 2020

Stability of single sheet GNNQQNY aggregates analyzed by replica exchange molecular dynamics: Antiparallel versus parallel association

1 reference

12 December 2020

Thermodynamics and Kinetics of Aggregation for the GNNQQNY Peptide

1 reference

12 December 2020

Computer simulations aimed at structure prediction of supersecondary motifs in proteins

1 reference

12 December 2020

A theory of linear and helical aggregations of macromolecules

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1002782

Identifiers

DOI

1 reference

journals/ploscb/Nasica-LabouzeM12

2 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 August 2017

1 reference

PubMed ID

23209391