(Q34510052)

2 August 2017

title

Genome-scale comparative analysis of gene fusions, gene fissions, and the fungal tree of life (English)

1 reference

2 August 2017

Guy Leonard

1

0 references

Thomas A Richards

object named as

Thomas A Richards

series ordinal

2

0 references

language of work or name

English

0 references

publication date

10 December 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

2 August 2017

published in

1 reference

2 August 2017

volume

109

1 reference

2 August 2017

issue

52

1 reference

2 August 2017

page(s)

21402-21407

1 reference

Causes and consequences of genome expansion in fungi

2 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Phylogenomic analyses predict sistergroup relationship of nucleariids and fungi and paraphyly of zygomycetes with significant support

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Blast2GO: A comprehensive suite for functional analysis in plant genomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Reconstructing the early evolution of Fungi using a six-gene phylogeny

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Rate and polarity of gene fusion and fission in Oryza sativa and Arabidopsis thaliana.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Myosin domain evolution and the primary divergence of eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

The Pfam protein families database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Lateral Gene Transfer and the Origins of Prokaryotic Groups

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

The root of the eukaryote tree pinpointed

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Evolutionary analyses of the small subunit of glutamate synthase: gene order conservation, gene fusions, and prokaryote-to-eukaryote lateral gene transfers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Rooting the eukaryote tree by using a derived gene fusion

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Evolution of gene fusions: horizontal transfer versus independent events

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Common exon duplication in animals and its role in alternative splicing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Domain combinations in archaeal, eubacterial and eukaryotic proteomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Interkingdom gene fusions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Lateral gene transfer and the nature of bacterial innovation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

The multiplicity of domains in proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535628

Reciprocal fusions of two genes in the formaldehyde detoxification pathway in ciliates and diatoms

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1210909110

Relative rates of gene fusion and fission in multi-domain proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1210909110

Reconciling the many faces of lateral gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1210909110

Acquisition of prokaryotic genes by fungal genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1210909110

Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1210909110

The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1210909110

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/23236161

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolutionary implications of the mosaic pyrimidine-biosynthetic pathway in eukaryotes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23236161

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1210909110

1 reference

2 August 2017

0 references

1 reference

2 August 2017

1 reference