(Q47583498)

4 February 2018

title

Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi (English)

1 reference

4 February 2018

main subject

horizontal gene transfer

0 references

1 reference

Guy Leonard

4

0 references

Thomas A Richards

object named as

Thomas A Richards

1

0 references

Nick Talbot

object named as

Nicholas J Talbot

6

0 references

Darren Soanes

2

object named as

Darren M Soanes

1 reference

4 February 2018

author name string

Peter G Foster

3

1 reference

4 February 2018

Christopher R Thornton

5

1 reference

4 February 2018

publication date

7 July 2009

1 reference

4 February 2018

published in

The Plant Cell

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4 February 2018

volume

21

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4 February 2018

issue

7

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4 February 2018

page(s)

1897-1911

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4 February 2018

Examining ancient inter-domain horizontal gene transfer.

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1 reference

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Reevaluation of the cox1 group I intron in Araceae and angiosperms indicates a history dominated by loss rather than horizontal transfer

26 August 2018

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26 August 2018

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26 August 2018

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26 August 2018

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Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements

26 August 2018

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26 August 2018

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Emergence of a new disease as a result of interspecific virulence gene transfer

26 August 2018

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26 August 2018

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Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

26 August 2018

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Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes

26 August 2018

1 reference

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Horizontal transfer of a plant transposon

26 August 2018

1 reference

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Highways of gene sharing in prokaryotes

26 August 2018

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26 August 2018

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Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes.

26 August 2018

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The genome of the social amoeba Dictyostelium discoideum

26 August 2018

1 reference

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Lateral gene transfer in eukaryotes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

The genome of the protist parasite Entamoeba histolytica

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

CDD: a Conserved Domain Database for protein classification

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Modeling compositional heterogeneity

26 August 2018

1 reference

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A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1alpha

26 August 2018

1 reference

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26 August 2018

1 reference

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26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

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26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

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26 August 2018

1 reference

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Widespread horizontal transfer of mitochondrial genes in flowering plants

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans

26 August 2018

1 reference

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Horizontal gene transfer accelerates genome innovation and evolution.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

How big is the iceberg of which organellar genes in nuclear genomes are but the tip?

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

An approximately unbiased test of phylogenetic tree selection

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

CONSEL: for assessing the confidence of phylogenetic tree selection

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Detection of lateral gene transfer among microbial genomes.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

On surrogate methods for detecting lateral gene transfer

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

The closest BLAST hit is often not the nearest neighbor.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

The horizontal transfer of Agrobacterium rhizogenes genes and the evolution of the genus Nicotiana

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Horizontal gene transfer and mutation: ngrol genes in the genome of Nicotiana glauca

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Multiple acquisitions via horizontal transfer of a group I intron in the mitochondrial cox1 gene during evolution of the Araceae family

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Phosphate as a limiting factor for the cell division of tobacco BY-2 cells

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Horizontal gene transfer among genomes: the complexity hypothesis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Crystal structure of carboxylesterase from Pseudomonas fluorescens, an alpha/beta hydrolase with broad substrate specificity

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Identification of a novel sugar-H+ symport protein, FucP, for transport of L-fucose into Escherichia coli.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Characterization of iucA and iucC genes of the aerobactin system of plasmid ColV-K30 in Escherichia coli

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

The origin of land plants: A matter of mycotrophism

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2729602

Horizontal Gene Transfer and the Evolution of Parasitic Protozoa

26 August 2018

1 reference

12 December 2020

Horizontal gene transfer of glycosyl hydrolases of the rumen fungi

1 reference

12 December 2020

Evolution of the cutinase gene family: evidence for lateral gene transfer of a candidate Phytophthora virulence factor

1 reference

12 December 2020

Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer

1 reference

12 December 2020

Identifiers

DOI

10.1105/TPC.109.065805

1 reference

4 February 2018

PMC publication ID

2729602

0 references

1 reference

4 February 2018