(Q34520767)

2 August 2017

title

Refining the Y chromosome phylogeny with southern African sequences (English)

1 reference

2 August 2017

1 reference

Enrico Macholdt

3

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Chiara Barbieri

object named as

Chiara Barbieri

1

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Lutz Roewer

object named as

Lutz Roewer

9

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Brigitte Pakendorf

11

object named as

Brigitte Pakendorf

1 reference

2 August 2017

2

Alexander Hübner

1 reference

2 August 2017

10

Mark Stoneking

1 reference

2 August 2017

Shengyu Ni

4

1 reference

2 August 2017

Sebastian Lippold

5

1 reference

2 August 2017

Roland Schröder

6

1 reference

2 August 2017

Sununguko Wata Mpoloka

7

1 reference

2 August 2017

Josephine Purps

8

1 reference

2 August 2017

publication date

4 April 2016

1 reference

2 August 2017

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2 August 2017

volume

135

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2 August 2017

issue

5

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2 August 2017

page(s)

541-553

1 reference

https://scigraph.springernature.com/pub.10.1007/s00439-016-1651-0

2 August 2017

exact match

0 references

cites work

The Y-chromosome point mutation rate in humans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

The Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Variation in male reproductive longevity across traditional societies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Human paternal and maternal demographic histories: insights from high-resolution Y chromosome and mtDNA sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in Southern Africa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Natural selection reduced diversity on human y chromosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Unraveling the complex maternal history of Southern African Khoisan populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Population growth inflates the per-individual number of deleterious mutations and reduces their mean effect

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Low-pass DNA sequencing of 1200 Sardinians reconstructs European Y-chromosome phylogeny

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Ancient substructure in early mtDNA lineages of southern Africa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Molecular dissection of the basal clades in the human Y chromosome phylogenetic tree

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

The genetic prehistory of southern Africa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

A calibrated human Y-chromosomal phylogeny based on resequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

A direct characterization of human mutation based on microsatellites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Rate of de novo mutations and the importance of father's age to disease risk

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

jModelTest 2: more models, new heuristics and parallel computing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Bayesian phylogenetics with BEAUti and the BEAST 1.7

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

A revised root for the human Y chromosomal phylogenetic tree: the origin of patrilineal diversity in Africa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

A framework for variation discovery and genotyping using next-generation DNA sequencing data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Signatures of the preagricultural peopling processes in sub-Saharan Africa as revealed by the phylogeography of early Y chromosome lineages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

phangorn: phylogenetic analysis in R

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Y-chromosomal variation in sub-Saharan Africa: insights into the history of Niger-Congo groups

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

A worldwide survey of human male demographic history based on Y-SNP and Y-STR data from the HGDP-CEPH populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Human Y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Genetic and demographic implications of the Bantu expansion: insights from human paternal lineages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Bayesian coalescent inference of past population dynamics from molecular sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Generating samples under a Wright-Fisher neutral model of genetic variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Y chromosome sequence variation and the history of human populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Variation in short tandem repeats is deeply structured by genetic background on the human Y chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

High male:female ratio of germ-line mutations: an alternative explanation for postulated gestational lethality in males in X-linked dominant disorders

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4835522

Paternal age and genetic load

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00439-016-1651-0

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00439-016-1651-0

Evaluation of saliva as a source of human DNA for population and association studies.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00439-016-1651-0

10.1007/S00439-016-1651-0

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference