(Q34525260)

2 August 2017

title

Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans (English)

1 reference

2 August 2017

main subject

Phytophthora infestans

object named as

Phytophthora infestans

1 reference

inferred from title

author

Christian Tellgren-Roth

object named as

Christian Tellgren-Roth

3

0 references

Eugene Savenkov

object named as

Eugene Savenkov

7

0 references

author name string

Ramesh R Vetukuri

1

1 reference

2 August 2017

Anna K M Åsman

2

1 reference

2 August 2017

Sultana N Jahan

4

1 reference

2 August 2017

Johan Reimegård

5

1 reference

2 August 2017

Johan Fogelqvist

6

1 reference

2 August 2017

Fredrik Söderbom

8

1 reference

2 August 2017

Anna O Avrova

9

1 reference

2 August 2017

Stephen C Whisson

10

1 reference

2 August 2017

Christina Dixelius

11

1 reference

2 August 2017

language of work or name

English

0 references

publication date

14 December 2012

1 reference

2 August 2017

1 reference

2 August 2017

volume

7

1 reference

2 August 2017

issue

12

1 reference

2 August 2017

page(s)

e51399

1 reference

Creative Commons Attribution 4.0 International

2 August 2017

copyright license

start time

14 December 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Can silencing of transposons contribute to variation in effector gene expression in Phytophthora infestans?

7 July 2018

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Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici

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7 July 2018

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Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint

7 July 2018

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Phytophthora infestans effector AVRblb2 prevents secretion of a plant immune protease at the haustorial interface

7 July 2018

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Phytophthora sojae avirulence effector Avr3b is a secreted NADH and ADP-ribose pyrophosphorylase that modulates plant immunity

7 July 2018

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7 July 2018

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7 July 2018

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Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana

7 July 2018

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Dynamic interactions between transposable elements and their hosts

7 July 2018

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Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles.

7 July 2018

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Understanding and exploiting late blight resistance in the age of effectors.

7 July 2018

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How do oomycete effectors interfere with plant life?

7 July 2018

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Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

7 July 2018

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Vive la différence: biogenesis and evolution of microRNAs in plants and animals

7 July 2018

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Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions

7 July 2018

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Small RNA sorting: matchmaking for Argonautes.

7 July 2018

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Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

7 July 2018

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Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi

7 July 2018

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miRBase: integrating microRNA annotation and deep-sequencing data

7 July 2018

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Ancient class of translocated oomycete effectors targets the host nucleus.

7 July 2018

1 reference

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Sequencing bias: comparison of different protocols of microRNA library construction

7 July 2018

1 reference

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A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Dicer-independent primal RNAs trigger RNAi and heterochromatin formation

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Genome-wide profiling of populus small RNAs

7 July 2018

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In planta expression screens of Phytophthora infestans RXLR effectors reveal diverse phenotypes, including activation of the Solanum bulbocastanum disease resistance protein Rpi-blb2.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

7 July 2018

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A single dicer gene is required for efficient gene silencing associated with two classes of small antisense RNAs in Mucor circinelloides

7 July 2018

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7 July 2018

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Small RNAs as guardians of the genome

7 July 2018

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Small RNAs in transcriptional gene silencing and genome defence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Small silencing RNAs: an expanding universe

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Phytophthora infestans: the plant (and R gene) destroyer.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

A novel Phytophthora infestans haustorium-specific membrane protein is required for infection of potato

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Conifers have a unique small RNA silencing signature

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Discovering microRNAs from deep sequencing data using miRDeep

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

miRBase: tools for microRNA genomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Common functions for diverse small RNAs of land plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Transgene-induced silencing of the zoosporogenesis-specific NIFC gene cluster of Phytophthora infestans involves chromatin alterations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Genome-wide profiling and analysis of Arabidopsis siRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Molecular biology. Amplified silencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

RETRACTED: Secondary siRNAs result from unprimed RNA synthesis and form a distinct class

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Distinct populations of primary and secondary effectors during RNAi in C. elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

A novel class of small RNAs bind to MILI protein in mouse testes

7 July 2018

1 reference

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A germline-specific class of small RNAs binds mammalian Piwi proteins

7 July 2018

1 reference

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On the origin and functions of RNA-mediated silencing: from protists to man

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

MicroRNAS and their regulatory roles in plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Phylogeny and megasystematics of phagotrophic heterokonts (kingdom Chromista)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Structural basis for double-stranded RNA processing by Dicer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

miRBase: microRNA sequences, targets and gene nomenclature

7 July 2018

1 reference

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The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists

7 July 2018

1 reference

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Viral class 1 RNase III involved in suppression of RNA silencing

7 July 2018

1 reference

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Cloning and characterization of microRNAs from rice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Families of short interspersed elements in the genome of the oomycete plant pathogen, Phytophthora infestans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

MicroRNAs: genomics, biogenesis, mechanism, and function

7 July 2018

2 references

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7 July 2018

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21 January 2018

The microRNA Registry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Two classes of small antisense RNAs in fungal RNA silencing triggered by non-integrative transgenes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Mfold web server for nucleic acid folding and hybridization prediction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Prediction of plant microRNA targets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Two classes of short interfering RNA in RNA silencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Initial assessment of gene diversity for the oomycete pathogen Phytophthora infestans based on expressed sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

Transformation of the oomycete pathogen, Phytophthora infestans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522703

A translocation signal for delivery of oomycete effector proteins into host plant cells

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Cell cycle regulator Cdc14 is expressed during sporulation but not hyphal growth in the fungus‐like oomycete Phytophthora infestans

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Internuclear gene silencing in Phytophthora infestans is established through chromatin remodelling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Optimization of transgene-mediated silencing in Phytophthora infestans and its association with small-interfering RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Biochemical dissection of RNA silencing in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Profiling and quantifying differential gene transcription in Phytophthora infestans prior to and during the early stages of potato infection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Target-align: a tool for plant microRNA target identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Internuclear Gene Silencing in Phytophthora infestans

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Differential interaction of Phytophthora infestans on tubers of potato cultivars with different levels of blight resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051399

Cloning and characterization of r3b; members of the r3 superfamily of late blight resistance genes show sequence and functional divergence

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23272103

12 December 2020

inferred from PubMed ID database lookup

Elevated amino acid biosynthesis in Phytophthora infestans during appressorium formation and potato infection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23272103

12 December 2020

inferred from PubMed ID database lookup

Silencing of the PiAvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23272103

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0051399

1 reference

2 August 2017

0 references

1 reference

2 August 2017

1 reference