(Q33519759)

27 July 2017

title

Genome-wide profiling of populus small RNAs (English)

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27 July 2017

5

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27 July 2017

Daniel Klevebring

1

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Nathaniel R Street

object named as

Nathaniel R Street

2

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Noah Fahlgren

object named as

Noah Fahlgren

3

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Stefan Jansson

object named as

Stefan Jansson

7

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author name string

Kristin D Kasschau

4

1 reference

27 July 2017

Joakim Lundeberg

6

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27 July 2017

language of work or name

English

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publication date

20 December 2009

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27 July 2017

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27 July 2017

volume

10

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27 July 2017

page(s)

620

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-620

27 July 2017

exact match

0 references

cites work

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21 June 2018

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21 June 2018

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Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

21 June 2018

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Genome structure and emerging evidence of an incipient sex chromosome in Populus

21 June 2018

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Conservation and divergence of microRNAs in Populus

21 June 2018

1 reference

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Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants

21 June 2018

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Update of ASRP: the Arabidopsis Small RNA Project database

21 June 2018

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21 June 2018

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Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa

21 June 2018

1 reference

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Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis

21 June 2018

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High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

21 June 2018

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Genome-wide profiling and analysis of Arabidopsis siRNAs

21 June 2018

1 reference

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Populus: a model system for plant biology

21 June 2018

1 reference

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

21 June 2018

1 reference

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A two-hit trigger for siRNA biogenesis in plants

21 June 2018

1 reference

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

21 June 2018

1 reference

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Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis

21 June 2018

1 reference

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MicroRNAS and their regulatory roles in plants

21 June 2018

1 reference

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A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis

21 June 2018

1 reference

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21 June 2018

1 reference

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Genome sequencing in microfabricated high-density picolitre reactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Expression of Arabidopsis MIRNA genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

De novo identification of repeat families in large genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Gardening the genome: DNA methylation in Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

microRNA-directed phasing during trans-acting siRNA biogenesis in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

VISTA: computational tools for comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Automated de novo identification of repeat sequence families in sequenced genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Endogenous and silencing-associated small RNAs in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Silencing on the spot. Induction and suppression of RNA silencing in the Agrobacterium-mediated transient expression system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

VISTA : visualizing global DNA sequence alignments of arbitrary length

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Tandem repeats finder: a program to analyze DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Criteria for annotation of plant MicroRNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

A toolkit for analysing large-scale plant small RNA datasets

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

PatMaN: rapid alignment of short sequences to large databases

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Stress-responsive microRNAs in Populus.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Highly specific gene silencing by artificial microRNAs in Arabidopsis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

RNA silencing genes control de novo DNA methylation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811130

31 October 2018

Identifiers

DOI

10.1186/1471-2164-10-620

1 reference

Dimensions Publication ID

27 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-620

9 September 2019

1 reference

27 July 2017

1 reference