(Q34533725)

27398999

2 August 2017

title

Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage (English)

1 reference

2 August 2017

0 references

Jennifer Gebetsberger

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

Aiming Ren

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Nikola Vušurović

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Pu Gao

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Michael Juen

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Christoph Kreutz

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Ronald Micura

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Dinshaw J Patel

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

publication date

11 July 2016

1 reference

27398999

2 August 2017

published in

Nature Chemical Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

702-708

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

Ribozyme Catalysis with a Twist: Active State of the Twister Ribozyme in Solution Predicted from Molecular Simulation

10 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Two Active Site Divalent Ions in the Crystal Structure of the Hammerhead Ribozyme Bound to a Transition State Analogue

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Chemistry and Biology of Self-Cleaving Ribozymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Crystal structure of the Varkud satellite ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Two Divalent Metal Ions and Conformational Changes Play Roles in the Hammerhead Ribozyme Cleavage Reaction.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Biochemical analysis of pistol self-cleaving ribozymes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

New classes of self-cleaving ribozymes revealed by comparative genomics analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

In-line alignment and Mg²⁺ coordination at the cleavage site of the env22 twister ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Structural basis for the fast self-cleavage reaction catalyzed by the twister ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Crystal structure and mechanistic investigation of the twister ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

A widespread self-cleaving ribozyme class is revealed by bioinformatics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

HDV-like self-cleaving ribozymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Identification of hammerhead ribozymes in all domains of life reveals novel structural variations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Small self-cleaving ribozymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Widespread occurrence of self-cleaving ribozymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Catalytic strategies of self-cleaving ribozymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Autolytic processing of dimeric plant virus satellite RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Tertiary contacts distant from the active site prime a ribozyme for catalysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Coot: model-building tools for molecular graphics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Control of gene expression by a natural metabolite-responsive ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

The Varkud satellite ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

PHENIX: building new software for automated crystallographic structure determination

7 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

7 July 2018

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2125

Transition state stabilization by a catalytic RNA

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

2-Aminopurine as a real-time probe of enzymatic cleavage and inhibition of hammerhead ribozymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Ribozyme structures and mechanisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Structure and function of the hairpin ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Crystal structure of a hepatitis delta virus ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4990474

The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis

7 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2125

A conformational switch controls hepatitis delta virus ribozyme catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2125

Mechanisms of RNA catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2125

Trans-acting hepatitis delta virus ribozyme: catalytic core and global structure are dependent on the 5' substrate sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2125

Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2125

Efficient Ribosomal Peptidyl Transfer Critically Relies on the Presence of the Ribose 2‘-OH at A2451 of 23S rRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2125

pKa shifting in double-stranded RNA is highly dependent upon nearest neighbors and bulge positioning

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27398999

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Understanding the acid-base properties of adenosine: the intrinsic basicities of N1, N3 and N7

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27398999

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCHEMBIO.2125

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27398999%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

27398999

1 reference