(Q34549709)

3 August 2017

title

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.). (English)

1 reference

3 August 2017

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Mikhail Ozerov

1

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Anti Vasemägi

object named as

Anti Vasemägi

2

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author name string

Vidar Wennevik

3

1 reference

3 August 2017

Eero Niemelä

4

1 reference

3 August 2017

Sergey Prusov

5

1 reference

3 August 2017

Matthew Kent

6

1 reference

3 August 2017

Juha-Pekka Vähä

7

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3 August 2017

language of work or name

English

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publication date

16 January 2013

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3 August 2017

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3 August 2017

volume

14

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3 August 2017

page(s)

12

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Temporally stable population-specific differences in run timing of one-sea-winter Atlantic salmon returning to a large river system

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

A high-density genome-wide association screen of sporadic ALS in US veterans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Genome-wide association of implantable cardioverter-defibrillator activation with life-threatening arrhythmias

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Estimates of array and pool-construction variance for planning efficient DNA-pooling genome wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Application of single nucleotide polymorphisms to non-model species: a technical review.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Pooled versus individual genotyping in a breast cancer genome-wide association study

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Rapid assessment of genetic ancestry in populations of unknown origin by genome-wide genotyping of pooled samples

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

A genome-wide association study for late-onset Alzheimer's disease using DNA pooling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Common sequence variants on 20q11.22 confer melanoma susceptibility

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Highly cost-efficient genome-wide association studies using DNA pools and dense SNP arrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

A genomewide association study of skin pigmentation in a South Asian population

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

A whole genome association study of neuroticism using DNA pooling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Allelotyping of pooled DNA with 250 K SNP microarrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Recent human effective population size estimated from linkage disequilibrium

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Analysis of pooled DNA samples on high density arrays without prior knowledge of differential hybridization rates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

The power of single-nucleotide polymorphisms for large-scale parentage inference

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

DNA Pooling: a tool for large-scale association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Selection and use of SNP markers for animal identification and paternity analysis in U.S. beef cattle

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Comparative performance of single nucleotide polymorphism and microsatellite markers for population genetic analysis.

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-12

Candidate loci reveal genetic differentiation between temporally divergent migratory runs of Chinook salmon (Oncorhynchus tshawytscha).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-12

The frequency of rDNA variants within individuals provides evidence of population history and gene flow across a grasshopper hybrid zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-12

HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-12

PoooL: an efficient method for estimating haplotype frequencies from large DNA pools

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-12

A study of the efficiency of pooling in haplotype estimation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-12

Most pooling variation in array-based DNA pooling is attributable to array error rather than pool construction error.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-12

Practical capability and cost effectiveness of a DNA pool-based genome-wide association study using BovineSNP50 array in a cattle population

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Generic genetic differences between farmed and wild Atlantic salmon identified from a 7K SNP-chip.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575319

Conservation genomics of Atlantic salmon: SNPs associated with QTLs for adaptive traits in parr from four trans-Atlantic backcrosses

27 October 2018

1 reference

12 December 2020

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean

1 reference

12 December 2020

Comparison of SNPs and microsatellites for fine-scale application of genetic stock identification of Chinook salmon in the Columbia River Basin

1 reference

12 December 2020

Differentiating salmon populations at broad and fine geographical scales with microsatellites and single nucleotide polymorphisms

1 reference

12 December 2020

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

1 reference

12 December 2020

Genome-wide genetic diversity of Holstein Friesian cattle reveals new insights into Australian and global population variability, including impact of selection

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-14-12

1 reference

3 August 2017

1 reference

3 August 2017

1 reference