(Q34551502)

English

De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes

scientific article

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scholarly article

1 reference

Europe PubMed Central

3 August 2017

De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes (English)

1 reference

Europe PubMed Central

3 August 2017

0 references

0 references

Astyanax mexicanus

object named as

Astyanax mexicanus

1 reference

based on heuristic

inferred from title

Hélène Hinaux

1

1 reference

Europe PubMed Central

3 August 2017

2

object named as

Julie Poulain

0 references

Corinne Da Silva

object named as

Corinne Da Silva

3

0 references

4

object named as

Céline Noirot

1 reference

Europe PubMed Central

3 August 2017

author name string

William R Jeffery

5

1 reference

Europe PubMed Central

3 August 2017

Didier Casane

6

1 reference

Europe PubMed Central

3 August 2017

Sylvie Rétaux

7

1 reference

Europe PubMed Central

3 August 2017

language of work or name

0 references

publication date

9 January 2013

1 reference

Europe PubMed Central

3 August 2017

1 reference

Europe PubMed Central

3 August 2017

8

1 reference

Europe PubMed Central

3 August 2017

e53553

1 reference

Europe PubMed Central

3 August 2017

1

1 reference

Europe PubMed Central

3 August 2017

copyright license

Creative Commons Attribution 4.0 International

9 January 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

1 reference

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7 July 2018

Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Quality control and preprocessing of metagenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

CDD: a Conserved Domain Database for the functional annotation of proteins

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7 July 2018

ZFIN: enhancements and updates to the Zebrafish Model Organism Database

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7 July 2018

Evolution of a behavioral shift mediated by superficial neuromasts helps cavefish find food in darkness.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Cave colonization without fasting capacities: an example with the fish Astyanax fasciatus mexicanus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Genes, modules and the evolution of cave fish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

A novel role for Mc1r in the parallel evolution of depigmentation in independent populations of the cavefish Astyanax mexicanus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Using GOstats to test gene lists for GO term association

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

The PROSITE database.

1 reference

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7 July 2018

Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

The lens has a specific influence on optic nerve and tectum development in the blind cavefish Astyanax

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

The mouse FKBP23 binds to BiP in ER and the binding of C-terminal domain is interrelated with Ca2+ concentration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Genetic divergence between cave and surface populations of Astyanax in Mexico (Characidae, Teleostei).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

1 reference

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7 July 2018

The Bioperl toolkit: Perl modules for the life sciences

1 reference

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7 July 2018

Cavefish as a model system in evolutionary developmental biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

Central role for the lens in cave fish eye degeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

CAP3: A DNA sequence assembly program

1 reference

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7 July 2018

Comparative analysis of Pax-6 sequence and expression in the eye development of the blind cave fish Astyanax fasciatus and its epigean conspecific.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

7 July 2018

The accuracy of reverse transcriptase from HIV-1.

1 reference

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7 July 2018

Restoring eye size in Astyanax mexicanus blind cavefish embryos through modulation of the Shh and Fgf8 forebrain organising centres.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053553

21 January 2018

Developmental mechanisms for retinal degeneration in the blind cavefish Astyanax mexicanus.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053553

21 January 2018

Mitochondrial molecular clocks and the origin of the major Otocephalan clades (Pisces: Teleostei): A new insight.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053553

21 January 2018

The biogeography of otophysan fishes (Ostariophysi: Otophysi): a new appraisal

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053553

21 January 2018

Using and understanding RepeatMasker.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053553

21 January 2018

A developmental staging table for Astyanax mexicanus surface fish and Pachón cavefish

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053553

21 January 2018

Blind cavefish and heat shock protein chaperones: a novel role for hsp90alpha in lens apoptosis.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053553

21 January 2018

Initial mutational steps toward loss of opsin gene function in cavefish.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3541186

27 October 2018

Pleiotropy and eye degeneration in cavefish

1 reference

https://pubmed.ncbi.nlm.nih.gov/23326453

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0053553

1 reference

Europe PubMed Central

3 August 2017

2013PLoSO...853553H

0 references

1 reference

Europe PubMed Central

3 August 2017

1 reference

Europe PubMed Central

3 August 2017

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