(Q34561390)

3 August 2017

1 reference

title

Beyond nucleic acid base pairs: from triads to heptads (English)

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3 August 2017

Sühnel J

1

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3 August 2017

publication date

1 January 2001

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3 August 2017

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3 August 2017

volume

61

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3 August 2017

issue

1

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3 August 2017

page(s)

32-51

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Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

3 August 2017

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21 January 2018

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DNA tetraplex formation in the control region of c-myc

21 January 2018

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Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: solution structure of the d(TCCCGTTTCCA) dimer

21 January 2018

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Functional and dysfunctional roles of quadruplex DNA in cells

21 January 2018

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G-quadruplex DNA structures--variations on a theme

21 January 2018

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G-quadruplex DNA: a potential target for anti-cancer drug design

21 January 2018

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G-Quadruplex DNA as a target for drug design

21 January 2018

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Structure-based design of selective and potent G quadruplex-mediated telomerase inhibitors

21 January 2018

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Multistranded DNA structures

21 January 2018

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Atomic structures at last: the ribosome in 2000.

21 January 2018

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Structure of the 30S ribosomal subunit

21 January 2018

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Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

21 January 2018

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Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: purification, crystallization and structure determination.

21 January 2018

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

21 January 2018

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Crystal structure of the ribosome at 5.5 A resolution

21 January 2018

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A lead-filled G-quadruplex: insight into the G-Quartet's selectivity for Pb(2+) over K(+)

21 January 2018

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Metal-modified nucleobase pairs and triplets as cytosine receptors

21 January 2018

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Metal-modified nucleobase sextet: joining four linear metal fragments (trans-a2PtII) and six model nucleobases to an exceedingly stable entity.

21 January 2018

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Geometric nomenclature and classification of RNA base pairs

21 January 2018

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Further refinement of the structure of yeast tRNAPhe

21 January 2018

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The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

21 January 2018

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The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals

21 January 2018

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Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals

21 January 2018

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Crystal structure of four-stranded Oxytricha telomeric DNA

21 January 2018

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Quadruplex structure of Oxytricha telomeric DNA oligonucleotides

21 January 2018

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Refined solution structure of the dimeric quadruplex formed from the Oxytricha telomeric oligonucleotide d(GGGGTTTTGGGG)

21 January 2018

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Solution structure of an unusually stable RNA tetraplex containing G- and U-quartet structures

21 January 2018

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Solution structure of a parallel-stranded G-quadruplex DNA

21 January 2018

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Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex

21 January 2018

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Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples

21 January 2018

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Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG)

21 January 2018

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Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex

21 January 2018

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Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T.AT, C+.GC and G.TA triples

21 January 2018

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Solution structure and hydration patterns of a pyrimidine.purine.pyrimidine DNA triplex containing a novel T.CG base-triple

21 January 2018

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The 2.9 A crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser)

21 January 2018

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The high-resolution crystal structure of a parallel-stranded guanine tetraplex

21 January 2018

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Self-association of a DNA loop creates a quadruplex: crystal structure of d(GCATGCT) at 1.8 A resolution

21 January 2018

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Solution Structure of theOxytrichaTelomeric Repeat d[G4(T4G4)3] G-tetraplex

21 January 2018

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Solution structure of a DNA quadruplex containing the fragile X syndrome triplet repeat

21 January 2018

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Solution Structure of the Na+ form of the Dimeric Guanine Quadruplex [d(G3T4G3)]2

21 January 2018

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Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex

21 January 2018

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Solution structures of unimolecular quadruplexes formed by oligonucleotides containing Oxytricha telomere repeats

21 January 2018

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A nucleic acid triple helix formed by a peptide nucleic acid-DNA complex

21 January 2018

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Molecular recognition in the FMN-RNA aptamer complex

21 January 2018

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Crystal structure of a group I ribozyme domain: principles of RNA packing

21 January 2018

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Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin

21 January 2018

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Solution structure of a pyrimidine-purine-pyrimidine triplex containing the sequence-specific intercalating non-natural base D3

21 January 2018

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Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads

21 January 2018

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The crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution

21 January 2018

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Solution structure of an intramolecular DNA triplex containing an N7-glycosylated guanine which mimics a protonated cytosine

21 January 2018

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Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex

21 January 2018

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A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats

21 January 2018

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Solution structure of a Na cation stabilized DNA quadruplex containing G.G.G.G and G.C.G.C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA

21 January 2018

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NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA

21 January 2018

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Solution structure of an intramolecular DNA triplex linked by hexakis(ethylene glycol) units: d(AGAGAGAA-(EG)6-TTCTCTCT-(EG)6-TCTCTCTT)

21 January 2018

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Solution structure of an intramolecular DNA triplex containing 5-(1-propynyl)-2'-deoxyuridine residues in the third strand

21 January 2018

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Crystal structure of the ribosomal RNA domain essential for binding elongation factors

21 January 2018

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NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere repeats

21 January 2018

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NMR studies on truncated sequences of human telomeric DNA: observation of a novel A-tetrad

21 January 2018

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Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples

21 January 2018

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The effect of sodium, potassium and ammonium ions on the conformation of the dimeric quadruplex formed by the Oxytricha nova telomere repeat oligonucleotide d(G(4)T(4)G(4))

21 January 2018

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Solution conformation of a parallel DNA triple helix with 5' and 3' triplex-duplex junctions

21 January 2018

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Structure of a triple helical DNA with a triplex-duplex junction

21 January 2018

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Crystal structure of a conserved ribosomal protein-RNA complex

21 January 2018

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An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2

21 January 2018

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Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot

21 January 2018

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The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges

21 January 2018

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Structures of the potassium-saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA

21 January 2018

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Crystal structure of the S15-rRNA complex

21 January 2018

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A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations

21 January 2018

1 reference

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NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform

21 January 2018

1 reference

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NMR observation of a novel C-tetrad in the structure of the SV40 repeat sequence GGGCGG

21 January 2018

1 reference

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2.8 A crystal structure of the malachite green aptamer

21 January 2018

1 reference

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The 1.3 A crystal structure of a biotin-binding pseudoknot and the basis for RNA molecular recognition

21 January 2018

1 reference

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A two-stranded template-based approach to G.(C-A) triad formation: designing novel structural elements into an existing DNA framework

21 January 2018

1 reference

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The crystal structure of UUCG tetraloop

21 January 2018

1 reference

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A diamond-shaped zipper-like DNA architecture containing triads sandwiched between mismatches and tetrads

21 January 2018

1 reference

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The structural basis for molecular recognition by the vitamin B 12 RNA aptamer

21 January 2018

1 reference

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Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain

21 January 2018

1 reference

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A double chain reversal loop and two diagonal loops define the architecture of a unimolecular DNA quadruplex containing a pair of stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads flanked by a G-(T-T) Triad and a T-T-T triple

21 January 2018

1 reference

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DNA G-quartets in a 1.86 A resolution structure of an Oxytricha nova telomeric protein-DNA complex

21 January 2018

1 reference

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V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads

21 January 2018

1 reference

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Database of non-canonical base pairs found in known RNA structures

21 January 2018

1 reference

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DNA-cation interactions: The major and minor grooves are flexible ionophores.

21 January 2018

1 reference

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A DNA pentaplex incorporating nucleobase quintets

21 January 2018

1 reference

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Simulations of the molecular dynamics of nucleic acids

21 January 2018

1 reference

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Computational methods for RNA structure determination

21 January 2018

1 reference

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Molecular dynamics simulation of nucleic acids

21 January 2018

1 reference

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Statistical analysis of atomic contacts at RNA-protein interfaces

21 January 2018

1 reference

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A molecular mechanics and dynamics study of alternate triple-helices involving the integrase-binding site of the HIV-1 virus and oligonucleotides having a 3'-3' internucleotide junction

21 January 2018

1 reference

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Hydration of the dTn.dAn x dTn parallel triple helix: a Fourier transform infrared and gravimetric study correlated with molecular dynamics simulations

21 January 2018

1 reference

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Recognition of GC base pairs by triplex forming oligonucleotides containing nucleosides derived from 2-aminopyridine

21 January 2018

1 reference

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Molecular dynamics simulations on parallel and antiparallel C.G*G triplexes.

21 January 2018

1 reference

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Structural properties of hybrid triplex of polycation deoxyribonucleic S-methylthiourea (DNmt) strands with a complementary DNA strand, probed by nanosecond molecular dynamics

21 January 2018

1 reference

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DNA-triplex stabilizing properties of 8-aminoguanine

21 January 2018

1 reference

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Molecular dynamics of DNA quadruplex molecules containing inosine, 6-thioguanine and 6-thiopurine.

21 January 2018

1 reference

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Structural dynamics and cation interactions of DNA quadruplex molecules containing mixed guanine/cytosine quartets revealed by large-scale MD simulations

21 January 2018

1 reference

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Structural characterization of a guanine-quadruplex ligand complex

21 January 2018

1 reference

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Stability and cooperativity of nucleic acid base triplets.

21 January 2018

1 reference

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Can G-C Hoogsteen-wobble pairs contribute to the stability of d(G. C-C) triplexes?

21 January 2018

1 reference

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A DFT study of the interresidue dependencies of scalar J-coupling and magnetic shielding in the hydrogen-bonding regions of a DNA triplex.

21 January 2018

1 reference

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The effect of amino groups on the stability of DNA duplexes and triplexes based on purines derived from inosine

21 January 2018

1 reference

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Dimeric Solution Structure of Two Cyclic Octamers: Four-Stranded DNA Structures Stabilized by A:T:A:T and G:C:G:C Tetrads

21 January 2018

1 reference

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Structure, Energetics, and Dynamics of the Nucleic Acid Base Pairs: NonempiricalAb InitioCalculations

21 January 2018

1 reference

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Pairing of isolated nucleic-acid bases in the absence of the DNA backbone

21 January 2018

1 reference

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Molecular modeling studies on G-quadruplex complexes of telomerase inhibitors: structure-activity relationships

21 January 2018

1 reference

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An Ambiguous Structure of a DNA 15-mer Thrombin Complex

21 January 2018

1 reference

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The contribution of cytosine protonation to the stability of parallel DNA triple helices

21 January 2018

1 reference

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Comparison of the solution structures of intramolecular DNA triple helices containing adjacent and non-adjacent CG.C+ triplets

21 January 2018

1 reference

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Solution Structure of an Intramolecular Pyrimidine−Purine−Pyrimidine Triplex Containing an RNA Third Strand

21 January 2018

1 reference

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Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

21 January 2018

1 reference

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The i-motif in nucleic acids

21 January 2018

1 reference

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Rules governing the orientation of the 2'-hydroxyl group in RNA

21 January 2018

1 reference

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Simulation of the structure and dynamics of nonhelical RNA motifs

21 January 2018

1 reference

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Hydrogen Bonding in DNA Base Pairs: Reconciliation of Theory and Experiment

21 January 2018

1 reference

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Sequence-independent recombination triple helices: a molecular dynamics study

21 January 2018

1 reference

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Influence of 5-bromodeoxycytosine substitution on triplex DNA stability and conformation

21 January 2018

1 reference

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Nanosecond Molecular Dynamics Simulations of Parallel and Antiparallel Guanine Quadruplex DNA Molecules

21 January 2018

1 reference

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Hydrogen-bonded Trimers of DNA Bases and their Interaction with Metal Cations: Ab initio Quantum-chemical and Empirical Potential Study

21 January 2018

1 reference

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Stabilization of the Purine•Purine•Pyrimidine DNA Base Triplets by Divalent Metal Cations

21 January 2018

1 reference

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10.1002/1097-0282(2001)61:1<32::AID-BIP10063>3.0.CO;2-B

21 January 2018

Identifiers

DOI

1 reference

3 August 2017

1 reference