(Q34588321)

3 August 2017

title

Understanding the specificity of a docking interaction between JNK1 and the scaffolding protein JIP1. (English)

1 reference

3 August 2017

Chunli Yan

1

1 reference

3 August 2017

Tamer Kaoud

2

1 reference

3 August 2017

Sunbae Lee

3

1 reference

3 August 2017

Kevin N Dalby

4

1 reference

3 August 2017

Pengyu Ren

5

1 reference

3 August 2017

language of work or name

English

0 references

publication date

25 January 2011

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3 August 2017

number of pages

12

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Journal of Physical Chemistry B

inferred from page(s)

published in

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3 August 2017

volume

115

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3 August 2017

issue

6

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3 August 2017

page(s)

1491-1502

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Computational simulations of the interactions between acetyl-coenzyme-A carboxylase and clodinafop: resistance mechanism due to active and nonactive site mutations

3 August 2017

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Optimization of 4,6-bis-anilino-1H-pyrrolo[2,3-d]pyrimidine IGF-1R tyrosine kinase inhibitors towards JNK selectivity

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The crystal structure of JNK2 reveals conformational flexibility in the MAP kinase insert and indicates its involvement in the regulation of catalytic activity

7 July 2018

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Comparative molecular dynamics simulations of histone deacetylase-like protein: binding modes and free energy analysis to hydroxamic acid inhibitors

7 July 2018

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Molecular dynamics simulations of NAD+-induced domain closure in horse liver alcohol dehydrogenase

7 July 2018

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7 July 2018

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Structural characterization of Lyn-SH3 domain in complex with a herpesviral protein reveals an extended recognition motif that enhances binding affinity

7 July 2018

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In silico activation of Src tyrosine kinase reveals the molecular basis for intramolecular autophosphorylation

7 July 2018

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Investigating the accessibility of the closed domain conformation of citrate synthase using essential dynamics sampling.

7 July 2018

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Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125.

7 July 2018

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Exploring protein native states and large-scale conformational changes with a modified generalized born model

7 July 2018

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A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

7 July 2018

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Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes.

7 July 2018

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Protocol for MM/PBSA molecular dynamics simulations of proteins

7 July 2018

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Targeting JNK for therapeutic benefit: from junk to gold?

7 July 2018

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The protein kinase complement of the human genome

7 July 2018

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Absolute comparison of simulated and experimental protein-folding dynamics

7 July 2018

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All-Atom Structure Prediction and Folding Simulations of a Stable Protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Docking interactions in the mitogen-activated protein kinase cascades

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Crystal structures of MAP kinase p38 complexed to the docking sites on its nuclear substrate MEF2A and activator MKK3b

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

MAPKK-independent activation of p38alpha mediated by TAB1-dependent autophosphorylation of p38alpha

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Identification of the critical features of a small peptide inhibitor of JNK activity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

The JNK signal transduction pathway

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Analysis of a 10-ns molecular dynamics simulation of mouse acetylcholinesterase

7 July 2018

1 reference

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Mitogen-activated protein (MAP) kinase pathways: regulation and physiological functions

7 July 2018

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Mammalian mitogen-activated protein kinase signal transduction pathways activated by stress and inflammation

7 July 2018

1 reference

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Identification of a docking groove on ERK and p38 MAP kinases that regulates the specificity of docking interactions

7 July 2018

1 reference

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Cell-permeable peptide inhibitors of JNK: novel blockers of beta-cell death

7 July 2018

1 reference

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Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

7 July 2018

1 reference

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Docking domains and substrate-specificity determination for MAP kinases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Creation of a stress-activated p90 ribosomal S6 kinase. The carboxyl-terminal tail of the MAPK-activated protein kinases dictates the signal transduction pathway in which they function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Investigating protein dynamics in collective coordinate space

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Protein modification: docking sites for kinases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Molecular cloning of multiple splicing variants of JIP-1 preferentially expressed in brain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Crystal structure of the complex of the cyclin D-dependent kinase Cdk6 bound to the cell-cycle inhibitor p19INK4d

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Structural basis for inhibition of the cyclin-dependent kinase Cdk6 by the tumour suppressor p16INK4a

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Crystal structure of JNK3: a kinase implicated in neuronal apoptosis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

A mammalian scaffold complex that selectively mediates MAP kinase activation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Differential targeting of MAP kinases to the ETS-domain transcription factor Elk-1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Evaluation of comparative protein structure modeling by MODELLER-3.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Activation mechanism of the MAP kinase ERK2 by dual phosphorylation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

The structure of mitogen-activated protein kinase p38 at 2.1-A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

VMD: visual molecular dynamics

7 July 2018

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Developmental expression in the mouse nervous system of the p493F12 SAP kinase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Selective interaction of JNK protein kinase isoforms with transcription factors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

JNK1: a protein kinase stimulated by UV light and Ha-Ras that binds and phosphorylates the c-Jun activation domain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Atomic structure of the MAP kinase ERK2 at 2.3 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

JNK2 contains a specificity-determining region responsible for efficient c-Jun binding and phosphorylation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Transcription factor ATF2 regulation by the JNK signal transduction pathway

7 July 2018

1 reference

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Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids".

7 July 2018

1 reference

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Computational alanine scanning mutagenesis--an improved methodological approach

27 October 2018

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A peptide inhibitor of c-Jun NH2-terminal kinase reduces myocardial ischemia-reperfusion injury and infarct size in vivo

27 October 2018

1 reference

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Multiple activation mechanisms of p38alpha mitogen-activated protein kinase

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042137

Effect of a bound non-nucleoside RT inhibitor on the dynamics of wild-type and mutant HIV-1 reverse transcriptase

27 October 2018

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Therapeutic promise of JNK ATP-noncompetitive inhibitors.

27 October 2018

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Interactive essential dynamics

27 October 2018

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Identification of specific interactions that drive ligand-induced closure in five enzymes with classic domain movements

27 October 2018

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Docking motif interactions in MAP kinases revealed by hydrogen exchange mass spectrometry

27 October 2018

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Investigation of neuraminidase-substrate recognition using molecular dynamics and free energy calculations

27 October 2018

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c-Src is activated by the epidermal growth factor receptor in a pathway that mediates JNK and ERK activation by gonadotropin-releasing hormone in COS7 cells

27 October 2018

1 reference

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Mechanism of acetylcholinesterase inhibition by fasciculin: a 5-ns molecular dynamics simulation.

27 October 2018

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Investigation of the mechanism of domain closure in citrate synthase by molecular dynamics simulation

27 October 2018

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Unraveling the Importance of Protein−Protein Interaction: Application of a Computational Alanine-Scanning Mutagenesis to the Study of the IgG1 Streptococcal Protein G (C2 Fragment) Complex

27 October 2018

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Essential domain motions in barnase revealed by MD simulations

9 December 2018

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12 December 2020

Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50

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12 December 2020

Isoforms of Jun kinase are differentially expressed and activated in human monocyte/macrophage (THP-1) cells

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12 December 2020

Docking interactions induce exposure of activation loop in the MAP kinase ERK2

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12 December 2020

pp54 microtubule-associated protein 2 kinase. A novel serine/threonine protein kinase regulated by phosphorylation and stimulated by poly-L-lysine

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12 December 2020

Identifiers

DOI

10.1021/JP1073522

1 reference

3 August 2017

1 reference

3 August 2017

1 reference