(Q34590410)

3 August 2017

title

Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis (English)

1 reference

3 August 2017

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8

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3 August 2017

Christapher S Morrissey

object named as

Christapher S Morrissey

2

0 references

Mitchell J Weiss

object named as

Mitchell J Weiss

7

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author name string

Weisheng Wu

1

1 reference

3 August 2017

Cheryl A Keller

3

1 reference

3 August 2017

Tejaswini Mishra

4

1 reference

3 August 2017

Maxim Pimkin

5

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3 August 2017

Gerd A Blobel

6

1 reference

3 August 2017

publication date

15 October 2014

1 reference

3 August 2017

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3 August 2017

volume

24

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3 August 2017

issue

12

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3 August 2017

page(s)

1945-1962

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Principles of regulatory information conservation between mouse and human

3 August 2017

cites work

1 reference

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Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis

7 July 2018

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7 July 2018

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7 July 2018

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Structural Basis for LMO2-Driven Recruitment of the SCL:E47bHLH Heterodimer to Hematopoietic-Specific Transcriptional Targets

7 July 2018

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7 July 2018

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7 July 2018

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Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq

7 July 2018

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7 July 2018

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Chromatin occupancy analysis reveals genome-wide GATA factor switching during hematopoiesis

7 July 2018

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Inferring rules of lineage commitment in haematopoiesis

7 July 2018

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Genome-wide analyses reveal the extent of opportunistic STAT5 binding that does not yield transcriptional activation of neighboring genes

7 July 2018

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Intragenic enhancers act as alternative promoters

7 July 2018

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Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration

7 July 2018

1 reference

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Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation

7 July 2018

1 reference

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Gene induction and repression during terminal erythropoiesis are mediated by distinct epigenetic changes

7 July 2018

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Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

7 July 2018

1 reference

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Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Genome-wide analysis of simultaneous GATA1/2, RUNX1, FLI1, and SCL binding in megakaryocytes identifies hematopoietic regulators.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Bromodomain protein Brd3 associates with acetylated GATA1 to promote its chromatin occupancy at erythroid target genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

MEME-ChIP: motif analysis of large DNA datasets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Mapping and analysis of chromatin state dynamics in nine human cell types

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation

7 July 2018

1 reference

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FIMO: scanning for occurrences of a given motif

7 July 2018

1 reference

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Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

7 July 2018

1 reference

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Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators.

7 July 2018

1 reference

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7 July 2018

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GATA Switches as Developmental Drivers

7 July 2018

1 reference

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Discovery and characterization of chromatin states for systematic annotation of the human genome

7 July 2018

1 reference

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Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

GREAT improves functional interpretation of cis-regulatory regions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Definitive hematopoiesis requires Runx1 C-terminal-mediated subnuclear targeting and transactivation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Transcriptome analysis by strand-specific sequencing of complementary DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

TopHat: discovering splice junctions with RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

SCL and associated proteins distinguish active from repressive GATA transcription factor complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Model-based analysis of ChIP-Seq (MACS)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Molecular hallmarks of endogenous chromatin complexes containing master regulators of hematopoiesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Differential use of SCL/TAL-1 DNA-binding domain in developmental hematopoiesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

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Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

7 July 2018

1 reference

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Genome-wide mapping of in vivo protein-DNA interactions

7 July 2018

1 reference

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Distinct functions of dispersed GATA factor complexes at an endogenous gene locus

7 July 2018

1 reference

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Gene regulatory networks and the evolution of animal body plans

7 July 2018

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ETO-2 associates with SCL in erythroid cells and megakaryocytes and provides repressor functions in erythropoiesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

GATA-1 forms distinct activating and repressive complexes in erythroid cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Tie2Cre-mediated gene ablation defines the stem-cell leukemia gene (SCL/tal1)-dependent window during hematopoietic stem-cell development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Global regulation of erythroid gene expression by transcription factor GATA-1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Globin gene activation during haemopoiesis is driven by protein complexes nucleated by GATA-1 and GATA-2.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

7 July 2018

ETO interacting proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Runx1 is expressed in adult mouse hematopoietic stem cells and differentiating myeloid and lymphoid cells, but not in maturing erythroid cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Role of RUNX1 in adult hematopoiesis: analysis of RUNX1-IRES-GFP knock-in mice reveals differential lineage expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Control of megakaryocyte-specific gene expression by GATA-1 and FOG-1: role of Ets transcription factors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

The human genome browser at UCSC

7 July 2018

1 reference

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A negative cis-element regulates the level of enhancement by hypersensitive site 2 of the beta-globin locus control region

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

mSin3A regulates murine erythroleukemia cell differentiation through association with the TAL1 (or SCL) transcription factor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Specification of hematopoietic and vascular development by the bHLH transcription factor SCL without direct DNA binding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

p300 functions as a transcriptional coactivator for the TAL1/SCL oncoprotein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

TAL1 and LIM-only proteins synergistically induce retinaldehyde dehydrogenase 2 expression in T-cell acute lymphoblastic leukemia by acting as cofactors for GATA3

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Expression of the LIM-homeobox gene LH2 generates immortalized steel factor-dependent multipotent hematopoietic precursors.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

CREB-binding protein cooperates with transcription factor GATA-1 and is required for erythroid differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Unsuspected role for the T-cell leukemia protein SCL/tal-1 in vascular development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

The LIM-only protein Lmo2 is a bridging molecule assembling an erythroid, DNA-binding complex which includes the TAL1, E47, GATA-1 and Ldb1/NLI proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Erythroid-cell-specific properties of transcription factor GATA-1 revealed by phenotypic rescue of a gene-targeted cell line

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

AML1, the target of multiple chromosomal translocations in human leukemia, is essential for normal fetal liver hematopoiesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Preferred sequences for DNA recognition by the TAL1 helix-loop-helix proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Absence of blood formation in mice lacking the T-cell leukaemia oncoprotein tal-1/SCL

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Absence of yolk sac hematopoiesis from mice with a targeted disruption of the scl gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Cell-type-specific contacts to immunoglobulin enhancers in nuclei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

The SCL gene product: a positive regulator of erythroid differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

Conserved E boxes function as part of the enhancer in hypersensitive site 2 of the beta-globin locus control region. Role of basic helix-loop-helix proteins.

7 July 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.164830.113

Molecular evidence for hierarchical transcriptional lineage priming in fetal and adult stem cells and multipotent progenitors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.164830.113

Platelet-biased stem cells reside at the apex of the haematopoietic stem-cell hierarchy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.164830.113

GATA factor switching from GATA2 to GATA1 contributes to erythroid differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.164830.113

GATA-1 and erythropoietin cooperate to promote erythroid cell survival by regulating bcl-xL expression.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4248312

The T cell leukemia oncoprotein SCL/tal-1 is essential for development of all hematopoietic lineages

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25319994

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.164830.113

1 reference

3 August 2017

1 reference

3 August 2017

1 reference