(Q34651520)

3 August 2017

title

Adaptive covariation between the coat and movement proteins of prunus necrotic ringspot virus (English)

1 reference

Prunus necrotic ringspot virus

3 August 2017

main subject

object named as

prunus necrotic ringspot virus

1 reference

3

1 reference

3 August 2017

Mario A Fares

2

0 references

author name string

Francisco M Codoñer

series ordinal

1

1 reference

3 August 2017

language of work or name

English

0 references

publication date

1 June 2006

1 reference

3 August 2017

1 reference

3 August 2017

volume

80

1 reference

3 August 2017

issue

12

1 reference

3 August 2017

page(s)

5833-5840

1 reference

Replication of alfamo- and ilarviruses: role of the coat protein

3 August 2017

cites work

1 reference

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Electrostatic interaction between RNA and protein capsid in cowpea chlorotic mottle virus simulated by a coarse-grain RNA model and a Monte Carlo approach

7 July 2018

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7 July 2018

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RNA-binding properties and mapping of the RNA-binding domain from the movement protein of Prunus necrotic ringspot virus.

7 July 2018

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7 July 2018

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Variability and molecular typing of the woody-tree infecting prunus necrotic ringspot ilarvirus

7 July 2018

1 reference

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7 July 2018

1 reference

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Genetic dissection of the multiple functions of alfalfa mosaic virus coat protein in viral RNA replication, encapsidation, and movement

7 July 2018

1 reference

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Genome activation in alfamo- and ilarviruses

7 July 2018

1 reference

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Alfalfa mosaic virus and ilarviruses: involvement of coat protein in multiple steps of the replication cycle

7 July 2018

1 reference

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7 July 2018

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Virulence and molecular polymorphism of Prunus necrotic ringspot virus isolates

7 July 2018

1 reference

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Characterization of cucumber mosaic virus. V. Cell-to-cell movement requires capsid protein but not virions

7 July 2018

1 reference

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7 July 2018

1 reference

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7 July 2018

1 reference

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The structure of alfalfa mosaic virus capsid protein assembled as a T=1 icosahedral particle at 4.0-A resolution

7 July 2018

1 reference

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Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment

7 July 2018

1 reference

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Molecular studies on bromovirus capsid protein. II. Functional analysis of the amino-terminal arginine-rich motif and its role in encapsidation, movement, and pathology.

7 July 2018

1 reference

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Unbiased estimation of the rates of synonymous and nonsynonymous substitution

7 July 2018

1 reference

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Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis

7 July 2018

1 reference

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Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Specific RNA binding by amino-terminal peptides of alfalfa mosaic virus coat protein.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Biological Significance of the Seven Amino-Terminal Basic Residues of Brome Mosaic Virus Coat Protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

A functional equivalence of top component a RNA and coat protein in the initiation of infection by alfalfa mosaic virus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Limited proteolysis of alfalfa mosaic virus: influence on the structural and biological function of the coat protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Identification of regions of brome mosaic virus coat protein chemically cross-linked in situ to viral RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Effects of deletions in the N-terminal basic arm of brome mosaic virus coat protein on RNA packaging and systemic infection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Molecular Variability Among Isolates of Prunus Necrotic Ringspot Virus from Different Prunus spp.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Cell-to-cell movement of Alfalfa mosaic virus can be mediated by the movement proteins of Ilar-, bromo-, cucumo-, tobamo- and comoviruses and does not require virion formation.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Evidence for interaction between the 2a polymerase protein and the 3a movement protein of Cucumber mosaic virus

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Molecular evolution of the plant virus family Bromoviridae based on RNA3-encoded proteins

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Evolutionary relationships among members of the Bromoviridae deduced from whole proteome analysis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Mutational analysis of the RNA-binding domain of the Prunus necrotic ringspot virus (PNRSV) movement protein reveals its requirement for cell-to-cell movement

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

The C terminus of the movement protein of Brome mosaic virus controls the requirement for coat protein in cell-to-cell movement and plays a role in long-distance movement

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

SWAPSC: sliding window analysis procedure to detect selective constraints

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

The C-terminal 33 amino acids of the cucumber mosaic virus 3a protein affect virus movement, RNA binding and inhibition of infection and translation

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

The coat protein of prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Phylogeny of isolates of Prunus necrotic ringspot virus from the Ilarvirus Ringtest and identification of group-specific features

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

The molecular variability analysis of the RNA 3 of fifteen isolates of Prunus necrotic ringspot virus sheds light on the minimal requirements for the synthesis of its subgenomic RNA.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Role of the alfalfa mosaic virus movement protein and coat protein in virus transport

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Effect of C-terminal mutations of alfalfa mosaic virus coat protein on dimer formation and assembly in vitro

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Evolutionary relationships in the ilarviruses: nucleotide sequence of prunus necrotic ringspot virus RNA 3.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

Mutational analysis of the coat protein gene of brome mosaic virus: effects on replication and movement in barley and in Chenopodium hybridum

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

A Sliding Window-Based Method to Detect Selective Constraints in Protein-Coding Genes and Its Application to RNA Viruses

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472603

In vitro evidence for RNA binding properties of the coat protein of prunus necrotic ringspot ilarvirus and their comparison to related and unrelated viruses

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16731922

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Linear programming optimization and a double statistical filter for protein threading protocols

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16731922

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16731922

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.00122-06

1 reference

3 August 2017

1 reference

3 August 2017

1 reference