(Q34657701)

3 August 2017

title

tmVar: a text mining approach for extracting sequence variants in biomedical literature (English)

1 reference

3 August 2017

1 reference

1

Chih-Hsuan Wei

1 reference

3 August 2017

2

Bethany R Harris

1 reference

3 August 2017

4

Zhiyong Lu

1 reference

3 August 2017

Hung-Yu Kao

3

1 reference

3 August 2017

language of work or name

English

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publication date

5 April 2013

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3 August 2017

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3 August 2017

volume

29

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3 August 2017

issue

11

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3 August 2017

page(s)

1433-1439

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Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Automated extraction and semantic analysis of mutation impacts from the biomedical literature

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

ABCMdb: a database for the comparative analysis of protein mutations in ABC transporters, and a potential framework for a general application

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

SR4GN: a species recognition software tool for gene normalization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Bioinformatics for personal genome interpretation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

The gene normalization task in BioCreative III

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Improved mutation tagging with gene identifiers applied to membrane protein stability prediction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

EnzyMiner: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

The need for genetic variant naming standards in published abstracts of human genetic association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Overview of BioCreative II gene normalization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Integrating high dimensional bi-directional parsing models for gene mention tagging

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

BANNER: an executable survey of advances in biomedical named entity recognition.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Towards a systematic evaluation of protein mutation extraction systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

A workflow for mutation extraction and structure annotation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

MutationFinder: a high-performance system for extracting point mutation mentions from text

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

Automatic extraction of mutations from Medline and cross-validation with OMIM.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3661051

OSIRIS: a tool for retrieving literature about sequence variants.

7 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT156

Application of automatic mutation-gene pair extraction to diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT156

On the limited memory BFGS method for large scale optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT156

An entity tagger for recognizing acquired genomic variations in cancer literature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT156

Novel tools for extraction and validation of disease-related mutations applied to Fabry disease

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23564842

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTT156

1 reference

journals/bioinformatics/WeiHKL13

3 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 August 2017

1 reference