(Q34669459)

3 August 2017

title

In vivo proximity labeling for the detection of protein-protein and protein-RNA interactions (English)

1 reference

3 August 2017

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Roberto Bonasio

9

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Michiel Vermeulen

object named as

Michiel Vermeulen

8

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author name string

David B Beck

1

1 reference

3 August 2017

Varun Narendra

2

1 reference

3 August 2017

William J Drury

3

1 reference

3 August 2017

Ryan Casey

4

1 reference

3 August 2017

Pascal W T C Jansen

5

1 reference

3 August 2017

Zuo-Fei Yuan

6

1 reference

3 August 2017

Benjamin A Garcia

7

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3 August 2017

publication date

29 October 2014

1 reference

Journal of Proteome Research

3 August 2017

published in

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3 August 2017

volume

13

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3 August 2017

issue

12

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3 August 2017

page(s)

6135-6143

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Interactions with RNA direct the Polycomb group protein SCML2 to chromatin where it represses target genes

3 August 2017

cites work

1 reference

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Polycomb protein SCML2 regulates the cell cycle by binding and modulating CDK/CYCLIN/p21 complexes.

7 July 2018

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Biotin ligase tagging identifies proteins proximal to E-cadherin, including lipoma preferred partner, a regulator of epithelial cell-cell and cell-substrate adhesion

7 July 2018

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PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

7 July 2018

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Promiscuous RNA binding by Polycomb repressive complex 2.

7 July 2018

1 reference

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The N and C termini of ZO-1 are surrounded by distinct proteins and functional protein networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.

7 July 2018

1 reference

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Novel bilobe components in Trypanosoma brucei identified using proximity-dependent biotinylation.

7 July 2018

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A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

7 July 2018

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Modular regulatory principles of large non-coding RNAs

7 July 2018

1 reference

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PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes

7 July 2018

1 reference

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Molecular mechanisms of long noncoding RNAs

7 July 2018

1 reference

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lincRNAs act in the circuitry controlling pluripotency and differentiation

7 July 2018

1 reference

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Andromeda: a peptide search engine integrated into the MaxQuant environment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

The Polycomb complex PRC2 and its mark in life

7 July 2018

1 reference

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Genome-wide identification of polycomb-associated RNAs by RIP-seq

7 July 2018

1 reference

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Charting histone modifications and the functional organization of mammalian genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Molecular signals of epigenetic states

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

RNA traffic control of chromatin complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Transcriptome analysis by strand-specific sequencing of complementary DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Crystal structure of human spliceosomal U1 snRNP at 5.5 Å resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Ezh1 and Ezh2 maintain repressive chromatin through different mechanisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

CLIP: crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Ezh2 requires PHF1 to efficiently catalyze H3 lysine 27 trimethylation in vivo.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Molecular and cellular approaches for the detection of protein-protein interactions: latest techniques and current limitations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Engineering soluble monomeric streptavidin with reversible biotin binding capability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Advances in protein complex analysis using mass spectrometry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Chromatin profiling using targeted DNA adenine methyltransferase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Half a century of "the nuclear matrix"

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Nuclear matrix. Isolation and characterization of a framework structure from rat liver nuclei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

pParse: a method for accurate determination of monoisotopic peaks in high-resolution mass spectra.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

Exploiting the kernel trick to correlate fragment ions for peptide identification via tandem mass spectrometry

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4261942

26 October 2018

Identifiers

DOI

10.1021/PR500196B

1 reference

3 August 2017

1 reference

3 August 2017

1 reference