(Q34676045)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

Rotational position of a 5-methylcytosine-containing cyclobutane pyrimidine dimer in a nucleosome greatly affects its deamination rate (English)

1 reference

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18 January 2020

3

1 reference

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18 January 2020

author name string

Qian Song

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Vincent J Cannistraro

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

language of work or name

English

0 references

publication date

15 December 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biological Chemistry

18 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

volume

286

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

page(s)

6329-6335

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

Methyl CpG binding protein 2 (MeCP2) enhances photodimer formation at methyl-CpG sites but suppresses dimer deamination.

18 January 2020

cites work

1 reference

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Acceleration of 5-methylcytosine deamination in cyclobutane dimers by G and its implications for UV-induced C-to-T mutation hotspots

7 July 2018

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Cisplatin damage overrides the predefined rotational setting of positioned nucleosomes

7 July 2018

1 reference

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Sequence-dependent enhancement of hydrolytic deamination of cytosines in DNA by the restriction enzyme PspGI.

7 July 2018

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7 July 2018

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Accommodation and repair of a UV photoproduct in DNA at different rotational settings on the nucleosome surface

7 July 2018

1 reference

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Repair of UV lesions in nucleosomes--intrinsic properties and remodeling

7 July 2018

1 reference

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Mutations induced by ultraviolet light

7 July 2018

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Ultraviolet radiation-mediated damage to cellular DNA.

7 July 2018

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Effect of damage type on stimulation of human excision nuclease by SWI/SNF chromatin remodeling factor

7 July 2018

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TP53 mutations in human skin cancers.

7 July 2018

1 reference

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Deamination of 5-methylcytosines within cyclobutane pyrimidine dimers is an important component of UVB mutagenesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Crystal structure of a DNA decamer containing a cis-syn thymine dimer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Cyclobutane pyrimidine dimers are responsible for the vast majority of mutations induced by UVB irradiation in mammalian cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

DNA repair of a single UV photoproduct in a designed nucleosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

A multistep damage recognition mechanism for global genomic nucleotide excision repair

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Requirement of DNA polymerase eta for error-free bypass of UV-induced CC and TC photoproducts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Accuracy of thymine-thymine dimer bypass by Saccharomyces cerevisiae DNA polymerase eta

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Synthesis and nucleosome structure of DNA containing a UV photoproduct at a specific site

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Thermodynamic and base-pairing studies of matched and mismatched DNA dodecamer duplexes containing cis-syn, (6-4) and Dewar photoproducts of TT.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Oxidized, deaminated cytosines are a source of C --> T transitions in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Sunlight induces pyrimidine dimers preferentially at 5-methylcytosine bases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Crystal structure of the nucleosome core particle at 2.8 A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Recognition and repair of compound DNA lesions (base damage and mismatch) by human mismatch repair and excision repair systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Mutation hotspots due to sunlight in the p53 gene of nonmelanoma skin cancers.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Accessibility of a glucocorticoid response element in a nucleosome depends on its rotational positioning

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Thermal resistance to photoreactivation of specific mutations potentiated in E. coli B/r ung by ultraviolet light

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Cyclobutane-Type Pyrimidine Dimers in Polynucleotides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Origin of ultraviolet damage in DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Thymine dimer formation as a probe of the path of DNA in and between nucleosomes in intact chromatin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

cis-syn thymine dimers are not absolute blocks to replication by DNA polymerase I of Escherichia coli in vitro.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

A role for sunlight in skin cancer: UV-induced p53 mutations in squamous cell carcinoma

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Nucleotide excision repair of DNA by human cell extracts is suppressed in reconstituted nucleosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Effects of DNA looping on pyrimidine dimer formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

The DNA damage spectrum produced by simulated sunlight

7 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

Individual determination of the yield of the main UV-induced dimeric pyrimidine photoproducts in DNA suggests a high mutagenicity of CC photolesions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

Involvement of 5-methylcytosine in sunlight-induced mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

Cyclobutane pyrimidine dimers form preferentially at the major p53 mutational hotspot in UVB-induced mouse skin tumors

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

Preferential cis-syn thymine dimer bypass by DNA polymerase eta occurs with biased fidelity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

Sequence and time-dependent deamination of cytosine bases in UVB-induced cyclobutane pyrimidine dimers in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

The photochemistry of thymidylyl-(3'-5')-5-methyl-2'-deoxycytidine in aqueous solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

Nucleotide excision repair of the 5 S ribosomal RNA gene assembled into a nucleosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

Protection of DNA by alpha/beta-type small, acid-soluble proteins from Bacillus subtilis spores against cytosine deamination

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

UV damage to DNA strongly influences its rotational setting on the histone surface of reconstituted nucleosomes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057863

Formation of Cyclobutane dimers and (6-4) Photoproducts upon Far-UV Photolysis of 5-Methylcytosine-Containing Dinucleoside Monophosphates

26 October 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.183178

Kinetic analysis of the deamination reactions of cyclobutane dimers of thymidylyl-3',5'-2'-deoxycytidine and 2'-deoxycytidylyl-3',5'-thymidine

21 January 2018

1 reference

12 December 2020

Translational positioning of a nucleosomal glucocorticoid response element modulates glucocorticoid receptor affinity

1 reference

12 December 2020

UVB-induced cyclobutane pyrimidine dimer frequency correlates with skin cancer mutational hotspots in p53

1 reference

12 December 2020

DNA synthesis past a 5-methylC-containing cis-syn-cyclobutane pyrimidine dimer by yeast pol eta is highly nonmutagenic

1 reference

12 December 2020

In vivo evidence that UV-induced C-->T mutations at dipyrimidine sites could result from the replicative bypass of cis-syn cyclobutane dimers or their deamination products

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M110.183178

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21160086%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

21160086

1 reference