(Q34678141)

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Analysis of the spatial and temporal arrangement of transcripts over intergenic regions in the human malarial parasite Plasmodium falciparum.

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scholarly article

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Analysis of the spatial and temporal arrangement of transcripts over intergenic regions in the human malarial parasite Plasmodium falciparum (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Plasmodium falciparum

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3

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

4

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Karen Russell

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Sandra Hasenkamp

2

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

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publication date

19 April 2013

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Europe PubMed Central

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29 February 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

14

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

267

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Identification of a cis-acting DNA-protein interaction implicated in singular var gene choice in Plasmodium falciparum

1 reference

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A unified framework of overlapping genes: towards the origination and endogenic regulation

1 reference

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1 reference

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7 July 2018

Gametocytogenesis in malaria parasite: commitment, development and regulation

1 reference

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7 July 2018

From cradle to grave: RNA biology in malaria parasites.

1 reference

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7 July 2018

Analysis of the molecular mechanisms governing the stage-specific expression of a prototypical housekeeping gene during intraerythrocytic development of P. falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

The Apicomplexan AP2 family: integral factors regulating Plasmodium development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Long- and short-term selective forces on malaria parasite genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum

1 reference

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7 July 2018

A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Telomeric heterochromatin in Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Transcription factor AP2-Sp and its target genes in malarial sporozoites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Structural Determinants of DNA Binding by a P. falciparum ApiAP2 Transcriptional Regulator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

The varieties of gene amplification, diversification and hypervariability in the human malaria parasite, Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Patterns of gene-specific and total transcriptional activity during the Plasmodium falciparum intraerythrocytic developmental cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Control of gene expression in Plasmodium falciparum - ten years on.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Plasmodium gene regulation: far more to factor in.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

The genome of the simian and human malaria parasite Plasmodium knowlesi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Antigenic variation in Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Distinct and stage specific nuclear factors regulate the expression of falcipains, Plasmodium falciparum cysteine proteases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Chance and necessity in chromosomal gene distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

A universal framework for regulatory element discovery across all genomes and data types

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Mechanisms of gene regulation in Plasmodium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Antigenic variation in Plasmodium falciparum: gene organization and regulation of the var multigene family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Regulatory motifs uncovered among gene expression clusters in Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Epigenetic memory at malaria virulence genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Heterochromatin-mediated control of virulence gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Genome of the Host-Cell Transforming Parasite Theileria annulata Compared with T. parva

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

The epigenetic control of antigenic variation in Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Antigenic variation in Plasmodium falciparum is associated with movement of var loci between subnuclear locations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Economy, speed and size matter: evolutionary forces driving nuclear genome miniaturization and expansion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

The genome of Cryptosporidium hominis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Comparative analysis of apicomplexa and genomic diversity in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Complete Genome Sequence of the Apicomplexan, Cryptosporidium parvum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Discovery of gene function by expression profiling of the malaria parasite life cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Genome sequence of the human malaria parasite Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: identification of novel genes and diverse transcription start sites of messenger RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Antigenic variation at the infected red cell surface in malaria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Isolation and functional characterization of two distinct sexual-stage-specific promoters of the human malaria parasite Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Distinct frequency-distributions of homopolymeric DNA tracts in different genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Transcription mapping of a 100 kb locus of Plasmodium falciparum identifies an intergenic region in which transcription terminates and reinitiates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

7 July 2018

Plasmodium falciparum: Preinitiation complex occupancy of active and inactive promoters during erythrocytic stage.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

Gene organization features in A/T-rich organisms.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

Mutational analysis identifies a five base pair cis-acting sequence essential for GBP130 promoter activity in Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

Control of gene expression in Plasmodium falciparum.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

3' UTR signals necessary for expression of the Plasmodium gallinaceum ookinete protein, Pgs28, share similarities with those of yeast and plants

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

3' UTR elements enhance expression of Pgs28, an ookinete protein of Plasmodium gallinaceum

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

Gene regulation in the intraerythrocytic cycle of Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

Evolution of noncoding and silent coding sites in the Plasmodium falciparum and Plasmodium reichenowi genomes.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

Identification of regulatory elements in the Plasmodium falciparum genome

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

Positive and negative effects of deletions and mutations within the 5' flanking sequences of Plasmodium falciparum DNA polymerase delta.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

Physical and functional mapping of the transcriptional start sites of Plasmodium falciparum proliferating cell nuclear antigen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

26 October 2018

Stage specific expression of proliferating cell nuclear antigen and DNA polymerase delta from Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681616

26 October 2018

A simple RNA analysis method shows var and rif multigene family expression patterns in Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-267

21 January 2018

A 24 bp cis-acting element essential for the transcriptional activity of Plasmodium falciparum CDP-diacylglycerol synthase gene promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/23601558

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA processing in malarial parasites

1 reference

https://pubmed.ncbi.nlm.nih.gov/23601558

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The transcript encoding the circumsporozoite antigen of Plasmodium berghei utilizes heterogeneous polyadenylation sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/23601558

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-14-267

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23601558%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

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