(Q34680372)

3 August 2017

Effects of denaturants on the dynamics of loop formation in polypeptides (English)

1 reference

3 August 2017

1

Marco Buscaglia

1 reference

3 August 2017

3

William A Eaton

1 reference

3 August 2017

2

Lisa J Lapidus

1 reference

3 August 2017

4

James Hofrichter

1 reference

PubMed ID

16617069

3 August 2017

language of work or name

English

0 references

publication date

14 April 2006

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3 August 2017

1 reference

3 August 2017

91

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3 August 2017

1

1 reference

3 August 2017

276-288

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Determination of ultrafast protein folding rates from loop formation dynamics

3 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Random-coil behavior and the dimensions of chemically unfolded proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Effects of topology and excluded volume on protein denatured state conformational properties

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Fast kinetics and mechanisms in protein folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Measuring the rate of intramolecular contact formation in polypeptides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Phosphorescence lifetime of tryptophan in proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Dansyl labeled proteins: Determination of extinction coefficient and number of bound residues with radioactive dansyl chloride

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Protein denaturation. C. Theoretical models for the mechanism of denaturation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Excited state chemistry of aromatic amino acids and related peptides. III. Tryptophan

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Effect of proline and glycine residues on dynamics and barriers of loop formation in polypeptide chains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Molecular basis for the effect of urea and guanidinium chloride on the dynamics of unfolded polypeptide chains

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Kinetics of intramolecular contact formation in a denatured protein

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

The dominant interaction between peptide and urea is electrostatic in nature: a molecular dynamics simulation study

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

The backbone conformational entropy of protein folding: experimental measures from atomic force microscopy.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Application of the diffusion-collision model to the folding of three-helix bundle proteins.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Peptide loop-closure kinetics from microsecond molecular dynamics simulations in explicit solvent

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Fifty years of solvent denaturation.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Dynamics of intramolecular contact formation in polypeptides: distance dependence of quenching rates in a room-temperature glass.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Analysis of the structure of ribonuclease A in native and partially denatured states by time-resolved noradiative dynamic excitation energy transfer between site-specific extrinsic probes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

Modeling the role of disulfide bonds in protein folding: entropic barriers and pathways.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1479064

THE EFFECT OF COMPOUNDS OF THE UREA-GUANIDINIUM CLASS ON THE ACTIVITY COEFFICIENT OF ACETYLTETRAGLYCINE ETHYL ESTER AND RELATED COMPOUNDS

26 October 2018

1 reference

12 December 2020

The stability of hydrogen-bonded peptide structures in aqueous solution

1 reference

12 December 2020

Dynamics of chain closure: approximate treatment of nonlocal interactions

1 reference

12 December 2020

Computational simulation of the statistical properties of unfolded proteins

1 reference

12 December 2020

A Conformational Flexibility Scale for Amino Acids in Peptides

1 reference

12 December 2020

Protein-folding dynamics

1 reference

12 December 2020

The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale

1 reference

12 December 2020

Differential helix propensity of small apolar side chains studied by molecular dynamics simulations

1 reference

12 December 2020

Theory of polymer cyclization

1 reference

12 December 2020

A microscopic view of helix propagation: N and C-terminal helix growth in alanine helices

1 reference

12 December 2020

Selective binding and solvent denaturation

1 reference

12 December 2020

The Solubility of Amino Acids, Diglycine, and Triglycine in Aqueous Guanidine Hydrochloride Solutions

1 reference

12 December 2020

The role of sequence and structure in protein folding kinetics; the diffusion-collision model applied to proteins L and G

1 reference

12 December 2020

10.1529/BIOPHYSJ.105.071167

Identifiers

DOI

1 reference

3 August 2017

1 reference

3 August 2017

1 reference

PubMed ID

16617069