(Q34682263)

3 August 2017

title

High-throughput sequencing: a roadmap toward community ecology (English)

1 reference

high-throughput sequencing

3 August 2017

main subject

1 reference

1 reference

1

1 reference

3 August 2017

3

Dominique Gravel

1 reference

3 August 2017

Bérangère Péquin

2

1 reference

3 August 2017

publication date

11 March 2013

1 reference

3 August 2017

number of pages

15

1 reference

inferred from page(s)

published in

Ecology and Evolution

1 reference

3 August 2017

volume

3

1 reference

3 August 2017

issue

4

1 reference

3 August 2017

page(s)

1125-1139

1 reference

maintained by WikiProject

3 August 2017

1 reference

Phage-bacteria infection networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Distance decay of similarity in neotropical diatom communities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Novel communities from climate change

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Intraspecific variability in the response of bloom-forming marine microalgae to changed climate conditions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

MicrobeDB: a locally maintainable database of microbial genomic sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Pyrosequencing the Bemisia tabaci transcriptome reveals a highly diverse bacterial community and a robust system for insecticide resistance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Does phylogeny matter? Assessing the impact of phylogenetic information in ecological meta-analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Accounting for dispersal and biotic interactions to disentangle the drivers of species distributions and their abundances

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Molecular phylogenetics: principles and practice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Ecophylogenetics: advances and perspectives

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Sequencing our way towards understanding global eukaryotic biodiversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Time to change how we describe biodiversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Evolutionary informatics: unifying knowledge about the diversity of life

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Microbial biogeography of public restroom surfaces

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Arctic Ocean microbial community structure before and after the 2007 record sea ice minimum

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Using network analysis to explore co-occurrence patterns in soil microbial communities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Bacterial community assembly based on functional genes rather than species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

The ecological causes of individual specialisation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Illumina-based analysis of microbial community diversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Persistence increases with diversity and connectance in trophic metacommunities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Microbes in high arctic snow and implications for the cold biosphere

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

The microbial Phyllogeography of the carnivorous plant Sarracenia alata

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Tag-encoded FLX amplicon pyrosequencing for the elucidation of microbial and functional gene diversity in any environment.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Why intraspecific trait variation matters in community ecology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Using presence-only and presence-absence data to estimate the current and potential distributions of established invasive species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Spatial patterns of phylogenetic diversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Scenarios for global biodiversity in the 21st century

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Metacommunity phylogenetics: separating the roles of environmental filters and historical biogeography.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Unlocking short read sequencing for metagenomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Spatial mismatch and congruence between taxonomic, phylogenetic and functional diversity: the need for integrative conservation strategies in a changing world

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

A global network of coexisting microbes from environmental and whole-genome sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Picante: R tools for integrating phylogenies and ecology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Antagonistic coevolution accelerates molecular evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Ecology of the rare microbial biosphere of the Arctic Ocean

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Field theory for biogeography: a spatially explicit model for predicting patterns of biodiversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Microbial community structure in the North Pacific ocean

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Emerging horizons in biodiversity and ecosystem functioning research

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

The merging of community ecology and phylogenetic biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Biodiversity in microbial communities: system scale patterns and mechanisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

7 July 2018

The Beagle in a bottle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

New tools for discovering and characterizing microbial diversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Microbial biogeography: from taxonomy to traits

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

A general framework for the distance-decay of similarity in ecological communities.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

The evolutionary ecology of metacommunities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Incorporating plant functional diversity effects in ecosystem service assessments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Accuracy and quality of massively parallel DNA pyrosequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Dos and don'ts of testing the geographic mosaic theory of coevolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Archaea predominate among ammonia-oxidizing prokaryotes in soils

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Microbial diversity in the deep sea and the underexplored "rare biosphere"

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Spatial scaling of microbial biodiversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

A framework for community and ecosystem genetics: from genes to ecosystems.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Marine microbial diversity: can it be determined?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Life history implications of rRNA gene copy number in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Fine-scale phylogenetic architecture of a complex bacterial community.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Neutrality, niches, and dispersal in a temperate forest understory

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Functional markers in plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Biodiversity as spatial insurance in heterogeneous landscapes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

rRNA operon copy number reflects ecological strategies of bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

7 July 2018

1 reference

Sympatric Speciation: Models and Empirical Evidence

21 January 2018

1 reference

The ecology of individuals: incidence and implications of individual specialization

21 January 2018

1 reference

Integrating environmental and spatial processes in ecological community dynamics

21 January 2018

1 reference

'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say?

21 January 2018

1 reference

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes.

21 January 2018

1 reference

Reconciling niche and neutrality: the continuum hypothesis.

21 January 2018

1 reference

Partitioning the factors of spatial variation in regeneration density of shade-tolerant tree species

21 January 2018

1 reference

Combining conservation value, vulnerability, and effectiveness of mitigation actions in spatial conservation decisions: an application to coastal oil spill combating.

21 January 2018

1 reference

Phylogenetic metrics of community similarity

21 January 2018

1 reference

Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

21 January 2018

1 reference

Competition promotes the evolution of host generalists in obligate parasites.

21 January 2018

1 reference

Short pyrosequencing reads suffice for accurate microbial community analysis

21 January 2018

1 reference

Linking genes to communities and ecosystems: Daphnia as an ecogenomic model.

21 January 2018

1 reference

'Ecosystomics': ecology by sequencer.

21 January 2018

1 reference

The community effects of phenotypic and genetic variation within a predator population

21 January 2018

1 reference

Dynamics of demographically open mutualists: immigration, intraspecific competition, and predation impact goby populations

21 January 2018

1 reference

Commentary: do we have a consistent terminology for species diversity? Yes, if we choose to use it

21 January 2018

1 reference

Gut microbiota: metagenomics to study complex ecology.

21 January 2018

1 reference

Phylogenies and Community Ecology

21 January 2018

1 reference

Conservation biogeography: what's hot and what's not?

21 January 2018

1 reference

Predicting species distribution: offering more than simple habitat models

21 January 2018

1 reference

Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents

21 January 2018

1 reference

Host specificity of insect herbivores in tropical forests

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3631419

Using species co-occurrence networks to assess the impacts of climate change

26 October 2018

1 reference

Joint consequences of dispersal and niche overlap on local diversity and resource use

21 January 2018

1 reference

The metacommunity concept: a framework for multi-scale community ecology

21 January 2018

1 reference

Microbial eukaryotic distribution in a dynamic Beaufort Sea and the Arctic Ocean

21 January 2018

1 reference

The distance decay of similarity in biogeography and ecology

21 January 2018

1 reference

Let the concept of trait be functional!

21 January 2018

1 reference

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

21 January 2018

1 reference

21 January 2018

1 reference

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23610649

12 December 2020

inferred from PubMed ID database lookup

Defining and measuring ecological specialization

1 reference

7 January 2021

inferred from DOI database lookup

Conceptual issues in local adaptation

1 reference

7 January 2021

inferred from DOI database lookup

Trait diversity promotes stability of community dynamics

1 reference

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1002/ECE3.508

1 reference

release_lf5tvoznsnarti46kpkl5vcs6y

3 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/lf5tvoznsnarti46kpkl5vcs6y

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3631419

1 reference

3 August 2017

1 reference