(Q34691884)

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Practical use of chemical shift databases for protein solid-state NMR: 2D chemical shift maps and amino-acid assignment with secondary-structure information

scientific article published on 28 April 2013

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scholarly article

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29 February 2020

Practical use of chemical shift databases for protein solid-state NMR: 2D chemical shift maps and amino-acid assignment with secondary-structure information (English)

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29 February 2020

protein structure

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Keith J Fritzsching

1

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29 February 2020

2

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4

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author name string

K Schmidt-Rohr

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publication date

28 April 2013

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29 February 2020

Journal of Biomolecular NMR

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56

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2

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155-167

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29 February 2020

describes a project that uses

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inferred from PubMed Central ID database lookup

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0 references

Spectral editing of two-dimensional magic-angle-spinning solid-state NMR spectra for protein resonance assignment and structure determination

1 reference

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7 July 2018

PACSY, a relational database management system for protein structure and chemical shift analysis

1 reference

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7 July 2018

Atomic model of the type III secretion system needle

1 reference

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7 July 2018

Membrane protein structure and dynamics from NMR spectroscopy

1 reference

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Segmental polymorphism in a functional amyloid

1 reference

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A general Monte Carlo/simulated annealing algorithm for resonance assignment in NMR of uniformly labeled biopolymers

1 reference

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7 July 2018

A Monte Carlo/simulated annealing algorithm for sequential resonance assignment in solid state NMR of uniformly labeled proteins with magic-angle spinning

1 reference

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TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

1 reference

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Accurate measurement of methyl 13C chemical shifts by solid-state NMR for the determination of protein side chain conformation: the influenza a M2 transmembrane peptide as an example

1 reference

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7 July 2018

Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

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Solution Structure of the Integral Human Membrane Protein VDAC-1 in Detergent Micelles

1 reference

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Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

Consistent blind protein structure generation from NMR chemical shift data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

Solid-state NMR studies of the structure, dynamics, and assembly of beta-sheet membrane peptides and alpha-helical membrane proteins with antibiotic activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

The CCPN data model for NMR spectroscopy: development of a software pipeline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

Protein structure prediction using Rosetta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

ARIA: automated NOE assignment and NMR structure calculation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

Probability-based protein secondary structure identification using combined NMR chemical-shift data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

The penultimate rotamer library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

1 reference

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7 July 2018

Automated analysis of protein NMR assignments using methods from artificial intelligence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048757

7 July 2018

The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data

1 reference

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7 July 2018

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1 reference

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7 July 2018

Relationship between nuclear magnetic resonance chemical shift and protein secondary structure

1 reference

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7 July 2018

Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO).

1 reference

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TSAR: a program for automatic resonance assignment using 2D cross-sections of high dimensionality, high-resolution spectra

1 reference

https://api.crossref.org/works/10.1007%2FS10858-013-9732-Z

21 January 2018

Secondary structural analysis of proteins based on (13)C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database

1 reference

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1 reference

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26 October 2018

Identifiers

10.1007/S10858-013-9732-Z

1 reference

Europe PubMed Central

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29 February 2020

1 reference

Europe PubMed Central

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29 February 2020

1 reference

Europe PubMed Central

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29 February 2020

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