(Q34700082)

4 August 2017

title

Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays (English)

1 reference

4 August 2017

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Rajandeep S Sekhon

1

1 reference

4 August 2017

Roman Briskine

2

1 reference

4 August 2017

Candice N Hirsch

3

1 reference

4 August 2017

Chad L Myers

4

1 reference

4 August 2017

Nathan M Springer

5

1 reference

4 August 2017

C Robin Buell

6

1 reference

4 August 2017

Natalia de Leon

7

1 reference

4 August 2017

Shawn M Kaeppler

8

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4 August 2017

language of work or name

English

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publication date

23 April 2013

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4 August 2017

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4 August 2017

volume

8

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4 August 2017

issue

4

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4 August 2017

page(s)

e61005

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Creative Commons Attribution 4.0 International

4 August 2017

copyright license

start time

23 April 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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7 July 2018

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MaizeGDB: curation and outreach go hand-in-hand

7 July 2018

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Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize

7 July 2018

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Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

7 July 2018

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7 July 2018

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RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome

7 July 2018

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Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

7 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

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Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

7 July 2018

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

7 July 2018

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Genome-wide transcriptome analysis of two maize inbred lines under drought stress.

7 July 2018

1 reference

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Genome-wide mapping of alternative splicing in Arabidopsis thaliana

7 July 2018

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TopHat: discovering splice junctions with RNA-Seq

7 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 July 2018

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Pep1, a secreted effector protein of Ustilago maydis, is required for successful invasion of plant cells

7 July 2018

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The development of endosperm in grasses

7 July 2018

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A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

7 July 2018

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RNA-Seq: a revolutionary tool for transcriptomics

7 July 2018

1 reference

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

7 July 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

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The Sleipnir library for computational functional genomics

7 July 2018

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Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis

7 July 2018

1 reference

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A scalable method for integration and functional analysis of multiple microarray datasets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

A protective role for the embryo surrounding region of the maize endosperm, as evidenced by the characterisation of ZmESR-6, a defensin gene specifically expressed in this region.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Promoter features related to tissue specificity as measured by Shannon entropy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

A gene expression map of Arabidopsis thaliana development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Imprinting and seed development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Rapid transcriptome responses of maize (Zea mays) to UV-B in irradiated and shielded tissues

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Arabidopsis MET1 cytosine methyltransferase mutants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

DNA array profiling of gene expression changes during maize embryo development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Ab initio gene finding in Drosophila genomic DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Glossy15, an APETALA2-like gene from maize that regulates leaf epidermal cell identity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

ADP-glucose pyrophosphorylase in shrunken-2 and brittle-2 mutants of maize

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Expression of ADP-glucose pyrophosphorylase in maize (Zea mays L.) grain and source leaf during grain filling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Division and differentiation during normal and liguleless-1 maize leaf development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Genome-wide atlas of transcription during maize development.

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

A gene expression atlas of the model legume Medicago truncatula.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

Comparative transcriptional profiling of placenta and endosperm in developing maize kernels in response to water deficit

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

Gene expression profiling in response to ultraviolet radiation in maize genotypes with varying flavonoid content.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

The developmental dynamics of the maize leaf transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

The brown midrib3 (bm3) mutation in maize occurs in the gene encoding caffeic acid O-methyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

Maize anthocyanin regulatory gene pl is a duplicate of c1 that functions in the plant

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

Two paralogous genes encoding small subunits of ADP-glucose pyrophosphorylase in maize, Bt2 and L2, replace the single alternatively spliced gene found in other cereal species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

Genetic diversity contribution to errors in short oligonucleotide microarray analysis.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3634062

An atlas of gene expression from seed to seed through barley development

26 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061005

Maize genes encoding the small subunit of ADP-glucose pyrophosphorylase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23637782

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0061005

1 reference

4 August 2017

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1 reference

4 August 2017

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