(Q34746430)

4 August 2017

title

Temporal genomic evolution of bird sex chromosomes (English)

1 reference

4 August 2017

Jilin Zhang

2

0 references

Guojie Zhang

object named as

Guojie Zhang

6

0 references

author name string

Zongji Wang

1

1 reference

4 August 2017

Wei Yang

3

1 reference

4 August 2017

Na An

4

1 reference

4 August 2017

Pei Zhang

5

1 reference

4 August 2017

Qi Zhou

7

1 reference

4 August 2017

publication date

12 December 2014

1 reference

4 August 2017

published in

BMC Evolutionary Biology

1 reference

4 August 2017

volume

14

1 reference

4 August 2017

page(s)

250

1 reference

Creative Commons Attribution 4.0 International

4 August 2017

copyright license

start time

1 December 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s12862-014-0250-8

0 references

cites work

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7 July 2018

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Positive selection drives faster-Z evolution in silkmoths

7 July 2018

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7 July 2018

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Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation.

7 July 2018

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The faster-X effect: integrating theory and data

7 July 2018

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Expansion of the pseudo-autosomal region and ongoing recombination suppression in the Silene latifolia sex chromosomes

7 July 2018

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7 July 2018

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Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution

7 July 2018

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RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome

7 July 2018

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Progressive recombination suppression and differentiation in recently evolved neo-sex chromosomes

7 July 2018

1 reference

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Lack of dosage compensation accompanies the arrested stage of sex chromosome evolution in ostriches

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Trade-off between selection for dosage compensation and masculinization on the avian Z chromosome

7 July 2018

1 reference

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Sex-specific adaptation drives early sex chromosome evolution in Drosophila

7 July 2018

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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

7 July 2018

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Mechanisms and evolutionary patterns of mammalian and avian dosage compensation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Error-prone ZW pairing and no evidence for meiotic sex chromosome inactivation in the chicken germ line

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Fast gapped-read alignment with Bowtie 2

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 myr of Drosophila evolution.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Extensive X-linked adaptive evolution in central chimpanzees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Mutation bias is the driving force of codon usage in the Gallus gallus genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

The evolution of gene expression levels in mammalian organs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

DO VARIATIONS IN SUBSTITUTION RATES AND MALE MUTATION BIAS CORRELATE WITH LIFE-HISTORY TRAITS? A STUDY OF 32 MAMMALIAN GENOMES

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Buffering and the evolution of chromosome-wide gene regulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Sex-chromosome evolution: recent progress and the influence of male and female heterogamety

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Cytoscape 2.8: new features for data integration and network visualization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Synteny conservation of chicken macrochromosomes 1-10 in different avian lineages revealed by cross-species chromosome painting

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Dosage compensation and demasculinization of X chromosomes in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

7 July 2018

The genome of a songbird

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

The avian Z-linked gene DMRT1 is required for male sex determination in the chicken

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Female meiotic sex chromosome inactivation in chicken

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

SNP detection for massively parallel whole-genome resequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

TopHat: discovering splice junctions with RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Synteny conservation of the Z chromosome in 14 avian species (11 families) supports a role for Z dosage in avian sex determination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Rates of molecular evolution are linked to life history in flowering plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Ecological factors affect the level and scaling of avian BMR.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Natural selection in avian protein-coding genes expressed in brain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Codon usage in twelve species of Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Demasculinization of X chromosomes in the Drosophila genus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

PAML 4: phylogenetic analysis by maximum likelihood

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Fast-X on the Z: rapid evolution of sex-linked genes in birds

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Evolution on the X chromosome: unusual patterns and processes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes: Accipitridae).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Steps in the evolution of heteromorphic sex chromosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

A scan for positively selected genes in the genomes of humans and chimpanzees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

High chromosome conservation detected by comparative chromosome painting in chicken, pigeon and passerine birds

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Sexual antagonism and X inactivation--the SAXI hypothesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

7 July 2018

Male-driven evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Inferring the historical patterns of biological evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Four evolutionary strata on the human X chromosome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Comparative painting reveals strong chromosome homology over 80 million years of bird evolution.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Male-driven evolution of DNA sequences in birds

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Male-driven molecular evolution: a model and nucleotide sequence analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272511

Origins and functional evolution of Y chromosomes across mammals

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Recombination in the threespine stickleback genome--patterns and consequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Lineage-specific variation in slow- and fast-X evolution in primates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

The Relative Rates of Evolution of Sex Chromosomes and Autosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: a consequence of dosage compensation?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and Turkey.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Faster-Z evolution is predominantly due to genetic drift

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Effective population size and the Faster-X effect: empirical results and their interpretation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Effective population size and the faster-X effect: an extended model

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Comparison of the Z and W sex chromosomal architectures in elegant crested tinamou (Eudromia elegans) and ostrich (Struthio camelus) and the process of sex chromosome differentiation in palaeognathous birds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Origin and evolution of avian microchromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Male-biased mutation rates revealed from Z and W chromosome-linked ATP synthase alpha-subunit (ATP5A1) sequences in birds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Life history and the male mutation bias.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Strong regional biases in nucleotide substitution in the chicken genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Patterns of codon usage bias in Silene latifolia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12862-014-0250-8

Enhanced adaptive evolution of sperm-expressed genes on the mammalian X chromosome

21 January 2018

1 reference

12 December 2020

The effect of life-history and mode of inheritance on neutral genetic variability

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12 December 2020

Sex-linked mammalian sperm proteins evolve faster than autosomal ones

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12 December 2020

Mating systems, sperm competition, and the evolution of sexual dimorphism in birds

1 reference

12 December 2020

10.1186/S12862-014-0250-8

Identifiers

DOI

1 reference

Dimensions Publication ID

4 August 2017

0 references

1 reference

4 August 2017

1 reference