(Q34746906)

4 August 2017

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title

A feel for the template: zinc finger protein transcription factors and chromatin (English)

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4 August 2017

1

Fyodor D Urnov

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4 August 2017

1 January 2002

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Biochemistry and Cell Biology

4 August 2017

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4 August 2017

80

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4 August 2017

321-333

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4 August 2017

3

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Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative

4 August 2017

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Replication-coupled chromatin assembly is required for the repression of basal transcription in vivo

21 January 2018

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Binding of Gal4p and bicoid to nucleosomal sites in yeast in the absence of replication

21 January 2018

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Engineering polydactyl zinc-finger transcription factors

21 January 2018

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Positive and negative regulation of endogenous genes by designed transcription factors

21 January 2018

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

21 January 2018

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Expression and characterization of recombinant caveolin. Purification by polyhistidine tagging and cholesterol-dependent incorporation into defined lipid membranes

21 January 2018

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Perturbation of nucleosome structure by the erythroid transcription factor GATA-1.

21 January 2018

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Distinct domains of erythroid Krüppel-like factor modulate chromatin remodeling and transactivation at the endogenous beta-globin gene promoter

21 January 2018

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Hematopoietic development: a balancing act.

21 January 2018

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Nuclear hormone receptors involved in neoplasia: erb A exhibits a novel DNA sequence specificity determined by amino acids outside of the zinc-finger domain

21 January 2018

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Association of human TFIID-promoter complexes with silenced mitotic chromatin in vivo

21 January 2018

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An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA.

21 January 2018

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Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome.

21 January 2018

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Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4

21 January 2018

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Electrostatic mechanism of chromatin folding.

21 January 2018

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Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter.

21 January 2018

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Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors

21 January 2018

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The promoter-specific transcription factor Sp1 binds to upstream sequences in the SV40 early promoter

21 January 2018

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Macromolecular crowding: obvious but underappreciated

21 January 2018

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Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes

21 January 2018

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Chromatin as an essential part of the transcriptional mechanim

21 January 2018

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Structure and dynamic properties of a glucocorticoid receptor-induced chromatin transition

21 January 2018

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Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames

21 January 2018

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Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex

21 January 2018

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Arrested development of embryonic red cell precursors in mouse embryos lacking transcription factor GATA-1

21 January 2018

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21 January 2018

Winged helix proteins

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Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes

21 January 2018

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Analysis of vertebrate SCL loci identifies conserved enhancers

21 January 2018

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Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.

21 January 2018

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Understanding nuclear receptor function: from DNA to chromatin to the interphase nucleus

21 January 2018

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Conserved noncoding sequences are reliable guides to regulatory elements.

21 January 2018

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A structural taxonomy of DNA-binding domains

21 January 2018

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Generation of superhelical torsion by ATP-dependent chromatin remodeling activities

21 January 2018

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Cooperation among multiple transcription factors is required for access to minimal T-cell receptor alpha-enhancer chromatin in vivo

21 January 2018

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A histone octamer-like structure within TFIID

21 January 2018

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Considerations of transcriptional control mechanisms: do TFIID-core promoter complexes recapitulate nucleosome-like functions?

21 January 2018

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GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis

21 January 2018

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Facilitated binding of TATA-binding protein to nucleosomal DNA

21 January 2018

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

21 January 2018

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In vivo binding of active heat shock transcription factor 1 to human chromosome 9 heterochromatin during stress.

21 January 2018

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DNA recognition by normal and oncogenic thyroid hormone receptors. Unexpected diversity in half-site specificity controlled by non-zinc-finger determinants

21 January 2018

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Functional selectivity of recombinant mammalian SWI/SNF subunits

21 January 2018

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Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain

21 January 2018

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Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly

21 January 2018

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ATP-dependent remodeling and acetylation as regulators of chromatin fluidity

21 January 2018

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Cell cycle-regulated histone acetylation required for expression of the yeast HO gene

21 January 2018

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Remodeling of regulatory nucleoprotein complexes on the Xenopus hsp70 promoter during meiotic maturation of the Xenopus oocyte

21 January 2018

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Enrichment of regulatory signals in conserved non-coding genomic sequence

21 January 2018

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Accessibility of a glucocorticoid response element in a nucleosome depends on its rotational positioning

21 January 2018

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Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

21 January 2018

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A new use for the 'wing' of the 'winged' helix-turn-helix motif in the HSF-DNA cocrystal

21 January 2018

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Crystal structure of the nucleosome core particle at 2.8 A resolution

21 January 2018

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Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA

21 January 2018

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Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

21 January 2018

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DNA recognition by GAL4: structure of a protein-DNA complex.

21 January 2018

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Displacement of sequence-specific transcription factors from mitotic chromatin

21 January 2018

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Quantitative conservation of chromatin-bound RNA polymerases I and II in mitosis. Implications for chromosome structure

21 January 2018

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The number of charge-charge interactions stabilizing the ends of nucleosome DNA

21 January 2018

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An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array.

21 January 2018

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Marking of active genes on mitotic chromosomes

21 January 2018

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Mutants that make more lac repressor

21 January 2018

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Cofactor requirements for transcriptional activation by Sp1.

21 January 2018

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Design and selection of novel Cys2His2 zinc finger proteins

21 January 2018

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GAL4 transcription factor is not a "zinc finger" but forms a Zn(II)2Cys6 binuclear cluster

21 January 2018

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Nucleosomal location of the STE6 TATA box and Mat alpha 2p-mediated repression

21 January 2018

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Purified glucocorticoid receptors bind selectively in vitro to a cloned DNA fragment whose transcription is regulated by glucocorticoids in vivo

21 January 2018

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NF-kappa B-mediated chromatin reconfiguration and transcriptional activation of the HIV-1 enhancer in vitro

21 January 2018

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Promoter structure and transcriptional activation with chromatin templates assembled in vitro. A single Gal4-VP16 dimer binds to chromatin or to DNA with comparable affinity

21 January 2018

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A specific transcription factor that can bind either the 5S RNA gene or 5S RNA

21 January 2018

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Mobility of positioned nucleosomes on 5 S rDNA.

21 January 2018

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Isolation of a 7S particle from Xenopus laevis oocytes: a 5S RNA-protein complex

21 January 2018

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Identifying regulatory networks by combinatorial analysis of promoter elements

21 January 2018

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Structural determinants of nuclear receptor assembly on DNA direct repeats

21 January 2018

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Use of a macromolecular crowding agent to dissect interactions and define functions in transcriptional activation by a DNA-tracking protein: bacteriophage T4 gene 45 protein and late transcription

21 January 2018

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Structure and function of the nucleolus

21 January 2018

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Localization of RNA polymerase I in interphase cells and mitotic chromosomes by light and electron microscopic immunocytochemistry

21 January 2018

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Nucleosomes associated with newly replicated DNA have an altered conformation

21 January 2018

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Mitotic regulation of TFIID: inhibition of activator-dependent transcription and changes in subcellular localization.

21 January 2018

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SIR repression of a yeast heat shock gene: UAS and TATA footprints persist within heterochromatin

21 January 2018

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Nucleosome positioning and transcription-associated chromatin alterations on the human estrogen-responsive pS2 promoter

21 January 2018

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Binding of TATA binding protein to a naturally positioned nucleosome is facilitated by histone acetylation

21 January 2018

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Nucleosome positioning by the winged helix transcription factor HNF3

21 January 2018

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Structure of chromatin containing extensively acetylated H3 and H4

21 January 2018

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In vivo release of mitotic silencing of ribosomal gene transcription does not give rise to precursor ribosomal RNA processing

21 January 2018

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Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

21 January 2018

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Chromatin remodeling by transcriptional activation domains in a yeast episome.

21 January 2018

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Stable co-occupancy of transcription factors and histones at the HIV-1 enhancer

21 January 2018

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Acetylation of histones and transcription-related factors

21 January 2018

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Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast

21 January 2018

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Facilitated binding of GAL4 and heat shock factor to nucleosomal templates: differential function of DNA-binding domains.

21 January 2018

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An array of positioned nucleosomes potentiates thyroid hormone receptor action in vivo

21 January 2018

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Chromatin remodeling and transcriptional activation: the cast (in order of appearance).

21 January 2018

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A necessary good: nuclear hormone receptors and their chromatin templates

21 January 2018

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SWI/SNF stimulates the formation of disparate activator-nucleosome complexes but is partially redundant with cooperative binding.

21 January 2018

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Role of the histone amino termini in facilitated binding of a transcription factor, GAL4-AH, to nucleosome cores

21 January 2018

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ATP-dependent chromatin-remodeling complexes.

21 January 2018

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A possible mechanism for the inhibition of ribosomal RNA gene transcription during mitosis

21 January 2018

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Nucleosome mobilization catalysed by the yeast SWI/SNF complex

21 January 2018

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In vitro chromatin assembly of the HIV-1 promoter. ATP-dependent polar repositioning of nucleosomes by Sp1 and NFkappaB.

21 January 2018

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DNA recognition by Cys2His2 zinc finger proteins

21 January 2018

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A role for nucleosome assembly in both silencing and activation of the Xenopus TR beta A gene by the thyroid hormone receptor

21 January 2018

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Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor.

21 January 2018

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Deciphering gene expression regulatory networks.

21 January 2018

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21 January 2018

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Upstream stimulatory factors mediate estrogen receptor activation of the cathepsin D promoter

21 January 2018

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Gal4p-mediated chromatin remodeling depends on binding site position in nucleosomes but does not require DNA replication

21 January 2018

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Nucleoprotein architecture of the albumin transcriptional enhancer

21 January 2018

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Reversible and persistent changes in chromatin structure accompany activation of a glucocorticoid-dependent enhancer element.

21 January 2018

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The mechanism of action of thyroid hormones

21 January 2018

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Specific Binding of the λ Phage Repressor to λ DNA

21 January 2018

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A simplified formaldehyde fixation and immunoprecipitation technique for studying protein-DNA interactions

21 January 2018

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Regulation of c-fos expression in transgenic mice requires multiple interdependent transcription control elements

21 January 2018

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Assembly of DNA and protein during replication in HeLa cells

21 January 2018

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Expressing the human genome

21 January 2018

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The primary structure of transcription factor TFIIIA has 12 consecutive repeats

21 January 2018

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Nucleosome positioning by human Alu elements in chromatin

21 January 2018

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SWI/SNF chromatin remodeling requires changes in DNA topology

21 January 2018

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Translational positioning of a nucleosomal glucocorticoid response element modulates glucocorticoid receptor affinity

21 January 2018

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The DNA-binding domain of p53 contains the four conserved regions and the major mutation hot spots

21 January 2018

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Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

21 January 2018

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Silenced chromatin is permissive to activator binding and PIC recruitment

21 January 2018

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Binding of transcription factor TFIID to the major late promoter during in vitro nucleosome assembly potentiates subsequent initiation by RNA polymerase II

21 January 2018

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21 January 2018

Identifiers

DOI

10.1139/O02-084

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4 August 2017

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PubMed ID

12123285