(Q34760069)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

title

Detecting phylogenetic breakpoints and discordance from genome-wide alignments for species tree reconstruction (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

author name string

Cécile Ané

series ordinal

1

1 reference

PubMed publication ID

21362638

4 August 2017

publication date

28 February 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

Genome Biology and Evolution

24 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

page(s)

246-258

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

Phylogeny of gammaproteobacteria

24 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Long-branch attraction bias and inconsistency in Bayesian phylogenetics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Fine-scale phylogenetic discordance across the house mouse genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

A mixture model and a hidden markov model to simultaneously detect recombination breakpoints and reconstruct phylogenies.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Search for a 'Tree of Life' in the thicket of the phylogenetic forest

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Phylogenetic detection of recombination with a Bayesian prior on the distance between trees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

StepBrothers: inferring partially shared ancestries among recombinant viral sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

A model of horizontal gene transfer and the bacterial phylogeny problem

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Mapping Human Genetic Ancestry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Detecting recombination in evolving nucleotide sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Inferring phylogeny despite incomplete lineage sorting

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

The concordance of gene trees and species trees at two linked loci

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Heterotachy and long-branch attraction in phylogenetics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Serial SimCoal: a population genetics model for data from multiple populations and points in time

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Hierarchical Phylogenetic Models for Analyzing Multipartite Sequence Data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

A new look at the statistical model identification

7 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Bayesian estimation of concordance among gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Missing the forest for the trees: phylogenetic compression and its implications for inferring complex evolutionary histories

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

A likelihood method for the detection of selection and recombination using nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Model Selection and the Principle of Minimum Description Length

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

A Bayesian perspective on a non-parsimonious parsimony model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Detecting recombination in 4-taxa DNA sequence alignments with Bayesian hidden Markov models and Markov chain Monte Carlo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Automated phylogenetic detection of recombination using a genetic algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

GARD: a genetic algorithm for recombination detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Phylogenetic mixtures on a single tree can mimic a tree of another topology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Recco: recombination analysis using cost optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Dual multiple change-point model leads to more accurate recombination detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

An information-theoretic method for the treatment of plural ancestry in phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

GeneTree: comparing gene and species phylogenies using reconciled trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Modeling by shortest data description

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Estimating the Dimension of a Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Can we avoid "SIN" in the house of "no common mechanism"?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Phylogenetic inference under recombination using Bayesian stochastic topology selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

A dirichlet process covarion mixture model and its assessments using posterior predictive discrepancy tests.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR013

Addressing the shortcomings of three recent Bayesian methods for detecting interspecific recombination in DNA sequence alignments.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070431

On the subspecific origin of the laboratory mouse

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21362638

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Spatial and temporal heterogeneity in nucleotide sequence evolution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21362638

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVR013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362638%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

PubMed publication ID

21362638

1 reference