(Q34768364)

4 August 2017

title

MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements (English)

1 reference

4 August 2017

Guojun Yang

1

1 reference

4 August 2017

publication date

7 June 2013

1 reference

4 August 2017

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4 August 2017

volume

14

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4 August 2017

page(s)

186

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Creative Commons Attribution 2.0 Generic

4 August 2017

copyright license

start time

7 June 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Miniature inverted-repeat transposable elements: discovery, distribution, and activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

A rice Stowaway MITE for gene transfer in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

ATon, abundant novel nonautonomous mobile genetic elements in yellow fever mosquito (Aedes aegypti)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Burst expansion, distribution and diversification of MITEs in the silkworm genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Miniature inverted-repeat transposable elements of Stowaway are active in potato

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Small RNAs, DNA methylation and transposable elements in wheat

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

MUST: a system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

VisualRepbase: an interface for the study of occurrences of transposable element families

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

The Rice Annotation Project Database (RAP-DB): 2008 update

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Discovering and detecting transposable elements in genome sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Genome sequence of Aedes aegypti, a major arbovirus vector

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

A family of human microRNA genes from miniature inverted-repeat transposable elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

A rice Tc1/mariner-like element transposes in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

MAK, a computational tool kit for automated MITE analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

An active DNA transposon family in rice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

The Bioperl toolkit: Perl modules for the life sciences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Tourist: a large family of small inverted repeat elements frequently associated with maize genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3680318

Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE.

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-186

Genome-wide analysis of Stowaway-like MITEs in wheat reveals high sequence conservation, gene association, and genomic diversification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-186

Genetic variation in Oryza species detected by MITE-AFLP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-186

A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-186

Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-186

TE Displayer for post-genomic analysis of transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-186

Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-186

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-186

21 January 2018

Identifiers

DOI

10.1186/1471-2105-14-186

1 reference

4 August 2017

DBLP publication ID

journals/bmcbi/Yang13

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

4 August 2017

1 reference