(Q46681274)

24 December 2017

title

Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes (English)

1 reference

24 December 2017

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Mateusz Janicki

1

1 reference

24 December 2017

Rebecca Rooke

series ordinal

2

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24 December 2017

Guojun Yang

series ordinal

3

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24 December 2017

publication date

1 August 2011

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24 December 2017

published in

Chromosome Research

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24 December 2017

volume

19

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24 December 2017

issue

6

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24 December 2017

page(s)

787-808

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24 December 2017

TEclass--a tool for automated classification of unknown eukaryotic transposable elements.

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Repseek, a tool to retrieve approximate repeats from large DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The genome sequence of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The BED finger, a novel DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Current topics in genome evolution: molecular mechanisms of new gene formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

An Alu Transposition Model for the Origin and Expansion of Human Segmental Duplications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

DNA reassociation kinetics in relation to genome size in four amphibian species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Automated de novo identification of repeat sequence families in sequenced genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

New superfamilies of eukaryotic DNA transposons and their internal divisions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Nucleotide sequence of the maize transposable element Mul.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

LINE dancing in the human genome: transposable elements and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

All y'all need to know 'bout retroelements in cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposable elements, gene creation and genome rearrangement in flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

DNA insertion in the first intron of maize Adh1 affects message levels: cloning of progenitor and mutant Adh1 alleles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Consistent over-estimation of gene number in complex plant genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Mechanisms of recent genome size variation in flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Discovering and detecting transposable elements in genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A brief history of the status of transposable elements: from junk DNA to major players in evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Evolutionary dynamics of transposable elements in a small RNA world

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Tourist: a large family of small inverted repeat elements frequently associated with maize genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Genome sequence of the nematode C. elegans: a platform for investigating biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Retrotransposable elements and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

RAP: a new computer program for de novo identification of repeated sequences in whole genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Presence of miniature inverted-repeat transposable elements (MITEs) in the genome of Arabidopsis thaliana: characterisation of the Emigrant family of elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Selfish DNA and the origin of introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Polyploidy: genome obesity and its consequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

MUST: a system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Endogenous retroviral LTRs as promoters for human genes: a critical assessment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Contrasting patterns of DNA sequence arrangement in Apis mellifera (honeybee) and Musca domestica (housefly)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Species-specific homogeneity of the primate Alu family of repeated DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The dynamics of transposable elements in structured populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

TESD: a transposable element dynamics simulation environment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Base sequence studies of 300 nucleotide renatured repeated human DNA clones

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Fast algorithms for large-scale genome alignment and comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

LINE-mediated retrotransposition of marked Alu sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Next-generation sequencing reveals recent horizontal transfer of a DNA transposon between divergent mosquitoes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The fate of transposable elements in asexual populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The effects of recombination rate on the distribution and abundance of transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Computational prediction and molecular confirmation of Helitron transposons in the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The polychromatic Helitron landscape of the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The polydeoxyadenylate tract of Alu repetitive elements is polymorphic in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

PILER: identification and classification of genomic repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Fruit flies and humans respond differently to retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Mobile elements and chromosomal evolution in the virilis group of Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Epigenetic reprogramming in plant and animal development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposable elements and the evolution of regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Evidence that a family of miniature inverted-repeat transposable elements (MITEs) from the Arabidopsis thaliana genome has arisen from a pogo-like DNA transposon

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Non-mammalian c-integrases are encoded by giant transposable elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Mariner-like transposases are widespread and diverse in flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Eukaryotic transposable elements and genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A model of segmental duplication formation in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Genome size and the proportion of repeated nucleotide sequence DNA in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Considering transposable element diversification in de novo annotation approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The biochemical composition of the free-living amoebae Chaos chaos, Amoeba dubia and Amoeba proteus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Temperature controls nuclear import of Tam3 transposase in Antirrhinum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Genome sequence of the human malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Mariner Mos1 transposase optimization by rational mutagenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A role for host-parasite interactions in the horizontal transfer of transposons across phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Evolutionary history of mammalian transposons determined by genome-wide defragmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Regulatory changes as a consequence of transposon insertion

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Exaptation—a Missing Term in the Science of Form

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The bigger the C-value, the larger the cell: genome size and red blood cell size in vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Eukaryotic genome size databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Tobacco genomes quickly go up in smoke.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Identification of repeat structure in large genomes using repeat probability clouds

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposition of the Tourist-MITE mPing in yeast: an assay that retains key features of catalysis by the class 2 PIF/Harbinger superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Low molecular weight RNAs transcribed in vitro by RNA polymerase III from Alu-type dispersed repeats in Chinese hamster DNA are also found in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposon Express, a software application to report the identity of insertions obtained by comprehensive transposon mutagenesis of sequenced genomes: analysis of the preference for in vitro Tn5 transposition into GC-rich DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The most frequent constitutional translocation in humans, the t(11;22)(q23;q11) is due to a highly specific alu-mediated recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Epigenetic regulation of Mammalian genomes by transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Repetitive sequences in eukaryotic DNA and their expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Ubiquitous, interspersed repeated sequences in mammalian genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

An active DNA transposon family in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Pack-MULE transposable elements mediate gene evolution in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

PIFs meet Tourists and Harbingers: a superfamily reunion

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

On the future of genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

LINEs mobilize SINEs in the eel through a shared 3' sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Efficient algorithms and software for detection of full-length LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Rolling-circle transposons in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Molecular paleontology of transposable elements in the Drosophila melanogaster genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Helitrons on a roll: eukaryotic rolling-circle transposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A universal classification of eukaryotic transposable elements implemented in Repbase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

piRNAs, transposon silencing, and Drosophila germline development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposable elements and the evolution of genome size in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Long-term inheritance of the 28S rDNA-specific retrotransposon R2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Short retroposons in eukaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Long double-stranded sequences (dsRNA-B) of nuclear pre-mRNA consist of a few highly abundant classes of sequences: evidence from DNA cloning experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The nucleotide sequence of the ubiquitous repetitive DNA sequence B1 complementary to the most abundant class of mouse fold-back RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Ubiquitous transposon-like repeats B1 and B2 of the mouse genome: B2 sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

TEnest: automated chronological annotation and visualization of nested plant transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposable elements have rewired the core regulatory network of human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

REPuter: the manifold applications of repeat analysis on a genomic scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Gene movement by Helitron transposons contributes to the haplotype variability of maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Plant genomes: massive changes of the maize genome are caused by Helitrons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Initial sequencing and analysis of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Long-term evolution of transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Patternhunter II: highly sensitive and fast homology search

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A novel genome-scale repeat finder geared towards transposons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposase-derived transcription factors regulate light signaling in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Epigenetic regulation of transposable elements in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Genomic regulation of transposable elements in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Genetic analysis of the cytoplasmic dynein subunit families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The age and evolution of non-LTR retrotransposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Emergence of young human genes after a burst of retroposition in primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Evidence for interspecific transfer of the transposable element mariner between Drosophila and Zaprionus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

LTR_STRUC: a novel search and identification program for LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The origin and behavior of mutable loci in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A physical map of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Impact of transposable elements on the evolution of mammalian gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The Frog Prince: a reconstructed transposon from Rana pipiens with high transpositional activity in vertebrate cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The ancient mariner sails again: transposition of the human Hsmar1 element by a reconstructed transposase and activities of the SETMAR protein on transposon ends

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

RetroPred: A tool for prediction, classification and extraction of non-LTR retrotransposons (LINEs & SINEs) from the genome by integrating PALS, PILER, MEME and ANN.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Suffix-tree analyser (STAN): looking for nucleotidic and peptidic patterns in chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

SINEs and LINEs share common 3' sequences: a review.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposable elements: powerful facilitators of evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

ReRep: computational detection of repetitive sequences in genome survey sequences (GSS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

HERVd: database of human endogenous retroviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Impact of transposable elements on the organization and function of allopolyploid genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The largest eukaryotic genome of them all?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Human genome 10th anniversary. Will computers crash genomics?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Automated paleontology of repetitive DNA with REANNOTATE

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Towards completion of the Earth's proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

De novo repeat classification and fragment assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A family of human microRNA genes from miniature inverted-repeat transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Dual coding of siRNAs and miRNAs by plant transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

De novo identification of repeat families in large genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Combined evidence annotation of transposable elements in genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The L1 retrotransposition assay: a retrospective and toolkit

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

De novo identification of LTR retrotransposons in eukaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

TE Displayer for post-genomic analysis of transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Alu elements and the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Computational Approaches and Tools Used in Identification of Dispersed Repetitive DNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Empirical comparison of ab initio repeat finding programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Small RNA-Mediated Quiescence of Transposable Elements in Animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

High rate of horizontal transfer of transposable elements in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

SINE insertions: powerful tools for molecular systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

RISCI--Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposable elements and the epigenetic regulation of the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The case for cloud computing in genome informatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The C. elegans genome sequencing project: a beginning

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Repetitive-DNA elements are similarly distributed on Caenorhabditis elegans autosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

VisualRepbase: an interface for the study of occurrences of transposable element families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

ModuleOrganizer: detecting modules in families of transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A triptych of the evolution of plant transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

PLOTREP: a web tool for defragmentation and visual analysis of dispersed genomic repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Molecular and evolutionary analysis of two divergent subfamilies of a novel miniature inverted repeat transposable element in the yellow fever mosquito, Aedes aegypti

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Mosquito transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The changing tails of a novel short interspersed element in Aedes aegypti: genomic evidence for slippage retrotransposition and the relationship between 3' tandem repeats and the poly(dA) tail

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Size and structure of the bird genome. II. Repetitive DNA and sequence organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A unified classification system for eukaryotic transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Structure-based discovery and description of plant and animal Helitrons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

MAK, a computational tool kit for automated MITE analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Kiddo, a new transposable element family closely associated with rice genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

A rice Tc1/mariner-like element transposes in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Site-directed transposon integration in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

SMOTIF: efficient structured pattern and profile motif search.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Comparative analysis of processed pseudogenes in the mouse and human genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

RepPop: a database for repetitive elements in Populus trichocarpa

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Evolutionary dynamics and evolutionary history in the RTE clade of non-LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Genome Size Evolution in Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The functional role of pack-MULEs in rice inferred from purifying selection and expression profile

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

Do Plants Have a One-Way Ticket to Genomic Obesity?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10577-011-9230-7

The Repeat Pattern Toolkit (RPT): analyzing the structure and evolution of the C. elegans genome

21 January 2018

1 reference

12 December 2020

Characterization of a highly conserved sequence related to mutator transposable elements in maize

1 reference

12 December 2020

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

1 reference

12 December 2020

Factors that affect the horizontal transfer of transposable elements.

1 reference

12 December 2020

Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution

1 reference

12 December 2020

Identification and characterization of pseudogenes in the rice gene complement

1 reference

12 December 2020

Models of the population genetics of transposable elements

1 reference

12 December 2020

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

1 reference

12 December 2020

Transposon Display identifies individual transposable elements in high copy number lines

1 reference

12 December 2020

Molecular archeology of L1 insertions in the human genome.

1 reference

12 December 2020

Horizontal transfer of hobo transposable elements within the Drosophila melanogaster species complex: evidence from DNA sequencing

1 reference

12 December 2020

Mutations caused by the insertion of genetic material into the galactose operon of Escherichia coli

1 reference

12 December 2020

Transposon display for active DNA transposons in rice

1 reference

12 December 2020

MIPS plant genome information resources

1 reference

12 December 2020

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

1 reference

12 December 2020

HOPPSIGEN: a database of human and mouse processed pseudogenes

1 reference

12 December 2020

Barbara McClintock's controlling elements: now at the DNA level

1 reference

12 December 2020

A virophage at the origin of large DNA transposons

1 reference

12 December 2020

Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line

1 reference

12 December 2020

Stable non-mutator stocks of maize have sequences homologous to the Mu1 transposable element

1 reference

12 December 2020

Mutator-like elements in Arabidopsis thaliana. Structure, diversity and evolution

1 reference

12 December 2020

Revisiting horizontal transfer of transposable elements in Drosophila

1 reference

12 December 2020

Phylogenetic and functional characterization of the hAT transposon superfamily

1 reference

12 December 2020

DROSOPOSON: a knowledge base on chromosomal localization of transposable element insertions in Drosophila

1 reference

12 December 2020

Pack-MULEs carry functionality

1 reference

12 December 2020

Variable DNA methylation of transposable elements: the case study of mouse Early Transposons

1 reference

12 December 2020

A systematic search and classification of T2 family miniature inverted-repeat transposable elements (MITEs) in Xenopus tropicalis suggests the existence of recently active MITE subfamilies

1 reference

12 December 2020

MDM-1 and MDM-2: two mutator-derived MITE families in rice

1 reference

12 December 2020

Automated recognition of retroviral sequences in genomic data--RetroTector

1 reference

12 December 2020

Bov-B-mobilized SINEs in vertebrate genomes

1 reference

12 December 2020

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

1 reference

12 December 2020

Processed pseudogenes, processed genes, and spontaneous mutations in the Arabidopsis genome

1 reference

12 December 2020

Evidence for horizontal transmission of the P transposable element between Drosophila species

1 reference

12 December 2020

FORRepeats: detects repeats on entire chromosomes and between genomes

1 reference

12 December 2020

TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates

1 reference

12 December 2020

Isolation and characterization of a 1.7-kb transposable element from a mutator line of maize

1 reference

12 December 2020

10.1007/S10577-011-9230-7

Identifiers

DOI

1 reference

24 December 2017

1 reference

24 December 2017