(Q34768454)

4 August 2017

title

Inferring ancient metabolism using ancestral core metabolic models of enterobacteria (English)

1 reference

4 August 2017

Bing Ma

2

0 references

Jennifer L. Reed

object named as

Jennifer L Reed

series ordinal

3

0 references

author name string

David J Baumler

series ordinal

1

1 reference

4 August 2017

Nicole T Perna

series ordinal

4

1 reference

4 August 2017

publication date

11 June 2013

1 reference

4 August 2017

1 reference

4 August 2017

volume

7

1 reference

4 August 2017

page(s)

46

1 reference

Shrinking the metabolic solution space using experimental datasets

4 August 2017

cites work

1 reference

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Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Metabolic modeling of endosymbiont genome reduction on a temporal scale

7 July 2018

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An experimentally validated genome-scale metabolic reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228.

7 July 2018

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The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli

7 July 2018

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Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation

7 July 2018

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

7 July 2018

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The biomass objective function

7 July 2018

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What is flux balance analysis?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Applications of genome-scale metabolic reconstructions

7 July 2018

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Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain

7 July 2018

1 reference

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Genome-scale reconstruction of the metabolic network in Yersinia pestis, strain 91001.

7 July 2018

1 reference

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Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

7 July 2018

1 reference

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Reconstruction of biochemical networks in microorganisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

7 July 2018

1 reference

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Salmonella enterica requires ApbC function for growth on tricarballylate: evidence of functional redundancy between ApbC and IscU

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Systems metabolic engineering of Escherichia coli for L-threonine production

7 July 2018

1 reference

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A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Systems approach to refining genome annotation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Experimental and computational assessment of conditionally essential genes in Escherichia coli

7 July 2018

1 reference

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Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Chance and necessity in the evolution of minimal metabolic networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

ASAP: a resource for annotating, curating, comparing, and disseminating genomic data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Metabolic engineering of Escherichia coli for enhanced production of succinic acid, based on genome comparison and in silico gene knockout simulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Integrating high-throughput and computational data elucidates bacterial networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Genome sequence of Yersinia pestis KIM

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694032

Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli.

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-46

In silico design and adaptive evolution of Escherichia coli for production of lactic acid.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-46

Parallel evolution of virulence in pathogenic Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-46

Multiple alignment by sequence annealing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-46

21 January 2018

Identifiers

DOI

10.1186/1752-0509-7-46

1 reference

journals/bmcsb/BaumlerMRP13

4 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1047354712

0 references

Fatcat ID

release_6bks6knugjgabgrtliz7nml4jm

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/6bks6knugjgabgrtliz7nml4jm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3694032

1 reference

4 August 2017

1 reference