(Q34772011)

4 August 2017

title

Multiple routes lead to the native state in the energy landscape of the beta-trefoil family (English)

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4 August 2017

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4

José N Onuchic

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4 August 2017

Leslie L Chavez

1

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4 August 2017

Shachi Gosavi

series ordinal

2

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4 August 2017

Patricia A Jennings

series ordinal

3

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4 August 2017

language of work or name

English

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publication date

26 June 2006

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Proceedings of the National Academy of Sciences of the United States of America

4 August 2017

published in

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4 August 2017

volume

103

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4 August 2017

issue

27

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4 August 2017

page(s)

10254-10258

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P versus Q: structural reaction coordinates capture protein folding on smooth landscapes

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Equilibrium and kinetic folding pathways of a TIM barrel with a funneled energy landscape

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

The family feud: do proteins with similar structures fold via the same pathway?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Domain swapping is a consequence of minimal frustration

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Theory of protein folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Protein topology determines binding mechanism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Probing the folding free energy landscape of the Src-SH3 protein domain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Protein folding: the free energy surface

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Conserved and nonconserved features of the folding pathway of hisactophilin, a beta-trefoil protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Prediction of folding mechanism for circular-permuted proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Keeping it in the family: folding studies of related proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Structural events during the refolding of an all beta-sheet protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Conservation of folding pathways in evolutionarily distant globin sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Investigation of routes and funnels in protein folding by free energy functional methods

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Mechanisms and kinetics of beta-hairpin formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Experiment and theory highlight role of native state topology in SH3 folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Automated analysis of interatomic contacts in proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Contact order, transition state placement and the refolding rates of single domain proteins.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Theory of protein folding: the energy landscape perspective

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

From Levinthal to pathways to funnels

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

X-ray crystal structure of human acidic fibroblast growth factor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

7 July 2018

How does a protein fold?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Theoretical Studies of Protein Folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Spin glasses and the statistical mechanics of protein folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

High-resolution three-dimensional structure of interleukin 1 beta in solution by three- and four-dimensional nuclear magnetic resonance spectroscopy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Three-dimensional structure of human basic fibroblast growth factor, a structural homolog of interleukin 1 beta

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

beta-Trefoil fold. Patterns of structure and sequence in the Kunitz inhibitors interleukins-1 beta and 1 alpha and fibroblast growth factors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Protein folding funnels: a kinetic approach to the sequence-structure relationship

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Structure of hisactophilin is similar to interleukin-1 beta and fibroblast growth factor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

The beta bulge: a common small unit of nonrepetitive protein structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502444

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Topological frustration and the folding of interleukin-1 beta

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Evidence for an obligatory intermediate in the folding of interleukin-1 beta

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Interleukin-1 beta folding between pH 5 and 7: experimental evidence for three-state folding behavior and robust transition state positions late in folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Non-linear effects of temperature and urea on the thermodynamics and kinetics of folding and unfolding of hisactophilin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Thermodynamics of denaturation of hisactophilin, a beta-trefoil protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Real-time NMR Kinetic Studies Provide Global and Residue-specific Information on the Non-cooperative Unfolding of the β-Trefoil Protein, Interleukin-1β

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Conformational and dynamic characterization of the molten globule state of an apomyoglobin mutant with an altered folding pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Changes in the apomyoglobin folding pathway caused by mutation of the distal histidine residue

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Sequence Determinants of a Protein Folding Pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Parallel protein-unfolding pathways revealed and mapped

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Kinetics of folding of the all-beta sheet protein interleukin-1 beta

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510110103

Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathway

21 January 2018

1 reference

12 December 2020

Symmetric connectivity of secondary structure elements enhances the diversity of folding pathways

1 reference

12 December 2020

Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L

1 reference

12 December 2020

Protein folding bottlenecks: A lattice Monte Carlo simulation

1 reference

12 December 2020

The folding mechanism of a beta-sheet: the WW domain

1 reference

12 December 2020

Folding kinetics of the all-beta-sheet protein human basic fibroblast growth factor, a structural homolog of interleukin-1beta

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0510110103

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4 August 2017

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4 August 2017

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