(Q33850503)

29 July 2017

title

Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery (English)

1 reference

29 July 2017

0 references

1 reference

Tongye Shen

3

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Peter Guy Wolynes

series ordinal

5

object named as

Peter G Wolynes

1 reference

29 July 2017

4

José N Onuchic

1 reference

29 July 2017

Yaakov Levy

1

1 reference

29 July 2017

Samuel S Cho

series ordinal

2

1 reference

29 July 2017

language of work or name

English

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publication date

8 February 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

102

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29 July 2017

issue

7

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29 July 2017

page(s)

2373-2378

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Three-body interactions improve the prediction of rate and mechanism in protein folding models

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Theory of protein folding

5 July 2018

1 reference

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A cell-based screen for function of the four-helix bundle protein Rop: a new tool for combinatorial experiments in biophysics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Protein topology determines binding mechanism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

The present view of the mechanism of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Protein topology and stability define the space of allowed sequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Dramatic structural and thermodynamic consequences of repacking a protein's hydrophobic core

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

De novo design of helical bundles as models for understanding protein folding and function.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Conservation of folding pathways in evolutionarily distant globin sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

The energy landscape theory of protein folding: insights into folding mechanisms and scenarios

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

5 July 2018

1 reference

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Protein plasticity to the extreme: changing the topology of a 4-alpha-helical bundle with a single amino acid substitution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Symmetry and the energy landscapes of biomolecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Protein superfamilies and domain superfolds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Characterizing transition states in protein folding: an essential step in the puzzle

5 July 2018

1 reference

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

5 July 2018

1 reference

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Redesigning the hydrophobic core of a four-helix-bundle protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Structure of the ColE1 rop protein at 1.7 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

The structure of ColE1 rop in solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548997

Theory of protein folding: the energy landscape perspective

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409572102

Structural polymorphism of a marginally stable 4-alpha-helical bundle. Images of a trapped molten globule?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409572102

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409572102

Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409572102

The folding and dimerization of HIV-1 protease: evidence for a stable monomer from simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409572102

The folding of spectrin domains I: wild-type domains have the same stability but very different kinetic properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409572102

Characterization of the folding energy landscapes of computer generated proteins suggests high folding free energy barriers and cooperativity may be consequences of natural selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409572102

Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409572102

Dissecting RNA-protein interactions: RNA-RNA recognition by Rop

21 January 2018

1 reference

12 December 2020

Speeding up protein folding: mutations that increase the rate at which Rop folds and unfolds by over four orders of magnitude

1 reference

12 December 2020

Slow unfolding and refolding kinetics of the mesophilic Rop wild-type protein in the transition range

1 reference

12 December 2020

Hydrophobic collapse in multidomain protein folding

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0409572102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference