(Q34782992)

4 August 2017

title

Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data (English)

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4 August 2017

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5

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4 August 2017

Jonas Hagberg

4

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Samuel Lampa

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Samuel Lampa

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1

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author name string

Martin Dahlö

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2

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4 August 2017

Pall I Olason

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3

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4 August 2017

language of work or name

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25 June 2013

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4 August 2017

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4 August 2017

volume

2

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4 August 2017

issue

1

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4 August 2017

page(s)

9

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describes a project that uses

4 August 2017

MIRA

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Mira

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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7 July 2018

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The future of DNA sequence archiving

7 July 2018

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The genomic landscape of species divergence in Ficedula flycatchers

7 July 2018

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Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice

7 July 2018

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Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos

7 July 2018

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Data-driven unbiased curation of the TP53 tumor suppressor gene mutation database and validation by ultradeep sequencing of human tumors

7 July 2018

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Determination of the obesity-associated gene variants within the entire FTO gene by ultra-deep targeted sequencing in obese and lean children

7 July 2018

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Yabi: An online research environment for grid, high performance and cloud computing

7 July 2018

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The Sequence Read Archive: explosive growth of sequencing data.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Implementing a genomic data management system using iRODS in the Wellcome Trust Sanger Institute

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Sequencing of high-complexity DNA pools for identification of nucleotide and structural variants in regions associated with complex traits

7 July 2018

1 reference

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

7 July 2018

1 reference

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Ultra-deep sequencing of mouse mitochondrial DNA: mutational patterns and their origins

7 July 2018

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

7 July 2018

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Computational solutions to large-scale data management and analysis

7 July 2018

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

7 July 2018

1 reference

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ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

7 July 2018

1 reference

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Challenges of sequencing human genomes

7 July 2018

1 reference

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Whole-genome resequencing reveals loci under selection during chicken domestication

7 July 2018

1 reference

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Galaxy: a web-based genome analysis tool for experimentalists

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Sequencing technologies - the next generation

7 July 2018

1 reference

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Searching for SNPs with cloud computing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Managing and analyzing next-generation sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Establishing a successful bioinformatics core facility team

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Fast and accurate short read alignment with Burrows-Wheeler transform

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

TopHat: discovering splice junctions with RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

ABySS: a parallel assembler for short read sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Accurate whole human genome sequencing using reversible terminator chemistry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Next-generation sequencing transforms today's biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Advanced sequencing technologies and their wider impact in microbiology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Galaxy: a platform for interactive large-scale genome analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Genome sequencing in microfabricated high-density picolitre reactors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Taverna: a tool for the composition and enactment of bioinformatics workflows

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

The Bioperl toolkit: Perl modules for the life sciences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

MRBAYES: Bayesian inference of phylogenetic trees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Next generation RNA-sequencing in prognostic subsets of chronic lymphocytic leukemia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Life Technologies promises $1,000 genome.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

Identification of novel transcripts in annotated genomes using RNA-Seq

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3704847

26 October 2018

Identifiers

DOI

10.1186/2047-217X-2-9

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Dimensions Publication ID

4 August 2017

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4 August 2017

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