(Q34791987)

4 August 2017

title

A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli (English)

1 reference

4 August 2017

main subject

experimental evolution

1 reference

1 reference

7

Olivier Tenaillon

2 references

4 August 2017

ORCID Public Data File 2021

author name string

Ram P Maharjan

1

1 reference

4 August 2017

Joël Gaffé

2

1 reference

4 August 2017

Jessica Plucain

3

1 reference

4 August 2017

Martin Schliep

4

1 reference

4 August 2017

Lei Wang

5

1 reference

4 August 2017

Lu Feng

6

1 reference

4 August 2017

Thomas Ferenci

8

1 reference

4 August 2017

Dominique Schneider

9

1 reference

4 August 2017

language of work or name

English

0 references

publication date

3 July 2013

1 reference

4 August 2017

1 reference

4 August 2017

volume

14

1 reference

4 August 2017

page(s)

441

1 reference

The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates

4 August 2017

cites work

1 reference

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Genomic analysis of a key innovation in an experimental Escherichia coli population

8 July 2018

1 reference

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The multiplicity of divergence mechanisms in a single evolving population

8 July 2018

1 reference

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New insights into bacterial adaptation through in vivo and in silico experimental evolution

8 July 2018

1 reference

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The uncertain consequences of transferring bacterial strains between laboratories - rpoS instability as an example.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Shaping up the membrane: diacylglycerol coordinates spatial orientation of signaling.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Chromosomal rearrangements in Salmonella enterica serovar Typhi strains isolated from asymptomatic human carriers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Second-order selection for evolvability in a large Escherichia coli population

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Duplication frequency in a population of Salmonella enterica rapidly approaches steady state with or without recombination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

E Unibus Plurum: genomic analysis of an experimentally evolved polymorphism in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Genome evolution and adaptation in a long-term experiment with Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Gene amplification and adaptive evolution in bacteria.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Mapping short DNA sequencing reads and calling variants using mapping quality scores

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Bacterial physiology, regulation and mutational adaptation in a chemostat environment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Crystal structure of YegS, a homologue to the mammalian diacylglycerol kinases, reveals a novel regulatory metal binding site

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

The Latent Promiscuity of Newly Identified Microbial Lactonases Is Linked to a Recently Diverged Phosphotriesterase†

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Multiple pathways of selected gene amplification during adaptive mutation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Clonal adaptive radiation in a constant environment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Duplication and divergence: the evolution of new genes and old ideas

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Genomic changes arising in long-term stab cultures of Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Enrichment and elimination of mutY mutators in Escherichia coli populations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Second-order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Experimental analysis of molecular events during mutational periodic selections in bacterial evolution.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

An efficient recombination system for chromosome engineering in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

The role of population size, pleiotropy and fitness effects of mutations in the evolution of overlapping gene functions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Preservation of duplicate genes by complementary, degenerative mutations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

The chromosome of Salmonella paratyphi A is inverted by recombination between rrnH and rrnG

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Role of gene duplications in the adaptation of Salmonella typhimurium to growth on limiting carbon sources

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-441

Gene duplication and biased functional retention of paralogs in bacterial genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-441

The molecular diversity of adaptive convergence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-441

Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-441

Insertion sequence-driven evolution of Escherichia coli in chemostats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-441

The generation of multiple co-existing mal-regulatory mutations through polygenic evolution in glucose-limited populations of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-441

The influence of cellular physiology on the initiation of mutational pathways inEscherichia colipopulations

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3708739

Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23822838

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hyper-Production of -Galactosidase by Escherichia coli Bacteria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23822838

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-441

1 reference

4 August 2017

1 reference

4 August 2017

1 reference