(Q37997288)

26 August 2017

title

New insights into bacterial adaptation through in vivo and in silico experimental evolution (English)

1 reference

26 August 2017

1 reference

1 reference

Thomas Hindré

1

1 reference

26 August 2017

Carole Knibbe

series ordinal

2

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26 August 2017

Guillaume Beslon

series ordinal

3

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26 August 2017

Dominique Schneider

series ordinal

4

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26 August 2017

language of work or name

English

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publication date

27 March 2012

1 reference

Nature Reviews Microbiology

26 August 2017

published in

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26 August 2017

volume

10

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26 August 2017

issue

5

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26 August 2017

page(s)

352-365

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The evolution of life on the earth

26 August 2017

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Loss of social behaviors by myxococcus xanthus during evolution in an unstructured habitat

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Evolution of novel cooperative swarming in the bacterium Myxococcus xanthus.

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Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation

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Cooperation and competition in pathogenic bacteria

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Experimental evolution of a plant pathogen into a legume symbiont

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Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS.

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Genetic Basis of Growth Adaptation of Escherichia coli after Deletion of pgi, a Major Metabolic Gene

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Stress-induced evolution of Escherichia coli points to original concepts in respiratory cofactor selectivity

21 January 2018

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Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge

21 January 2018

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Evolutionary biology. Byte-sized evolution

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

An experiment in enzyme evolution. Studies with Pseudomonas aeruginosa amidase

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Enzyme activity and fitness: Evolution in solution

21 January 2018

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Evolution of penicillin-binding protein 2 concentration and cell shape during a long-term experiment with Escherichia coli

21 January 2018

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Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

21 January 2018

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Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of microbial diversity during prolonged starvation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary adaptation to environmental pH in experimental lineages of Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Directed evolution of ionizing radiation resistance in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Maintaining a healthy SPANC balance through regulatory and mutational adaptation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1,2-propanediol

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Temperature acclimation and competitive fitness: an experimental test of the beneficial acclimation assumption

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Repeatability and contingency in the evolution of a key innovation in phage lambda

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

The molecular diversity of adaptive convergence.

21 January 2018

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Changes in gene expression following high-temperature adaptation in experimentally evolved populations of E. coli.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Mutational paths towards increased fluoroquinolone resistance in Legionella pneumophila.

21 January 2018

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Rates and mechanisms of resistance development in Mycobacterium tuberculosis to a novel diarylquinoline ATP synthase inhibitor

21 January 2018

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Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity

21 January 2018

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Clonal adaptive radiation in a constant environment

21 January 2018

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Genomic evolution during a 10,000-generation experiment with bacteria

21 January 2018

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Experimental evolution of bet hedging.

21 January 2018

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Metabolic changes associated with adaptive diversification in Escherichia coli

21 January 2018

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21 January 2018

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21 January 2018

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Death and cannibalism in a seasonal environment facilitate bacterial coexistence

21 January 2018

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Evolutionary consequences of niche construction and their implications for ecology

21 January 2018

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Study of pyoverdine type and production by Pseudomonas aeruginosa isolated from cystic fibrosis patients: prevalence of type II pyoverdine isolates and accumulation of pyoverdine-negative mutations

21 January 2018

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Evolution of cooperation and conflict in experimental bacterial populations.

21 January 2018

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Developmental cheating in the social bacterium Myxococcus xanthus

21 January 2018

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Experimental evolution of selfish policing in social bacteria

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Adaptive radiation from resource competition in digital organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of resource cycling in ecosystems and individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Modelling bacterial speciation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

The evolutionary origin of complex features

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

A quantitative test of Hamilton's rule for the evolution of altruism

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Is evolvability evolvable?

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Genome evolution and adaptation in a long-term experiment with Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The biological cost of mutational antibiotic resistance: any practical conclusions?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Fusidic acid-resistant mutants of Salmonella enterica serovar typhimurium have low levels of heme and a reduced rate of respiration and are sensitive to oxidative stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Interplay in the selection of fluoroquinolone resistance and bacterial fitness

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Fusidic acid-resistant mutants of Salmonella enterica serovar Typhimurium with low fitness in vivo are defective in RpoS induction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The fitness cost of streptomycin resistance depends on rpsL mutation, carbon source and RpoS (sigmaS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

How antibiotics kill bacteria: from targets to networks

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Novel transcriptome patterns accompany evolutionary restoration of defective social development in the bacterium Myxococcus xanthus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Impact of individual mutations on increased fitness in adaptively evolved strains of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Adaptive evolution of an sRNA that controls Myxococcus development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

21 January 2018

Evolution and tinkering

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Negative epistasis between beneficial mutations in an evolving bacterial population

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Second-order selection for evolvability in a large Escherichia coli population

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Functional heterogeneity of RpoS in stress tolerance of enterohemorrhagic Escherichia coli strains

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary dynamics of bacteria in a human host environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of bacterial diversity and the origins of modularity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

21 January 2018

The road to modularity.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Spontaneous evolution of modularity and network motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Specialization can drive the evolution of modularity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Design of genetic networks with specified functions by evolution in silico.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Bistability, epigenetics, and bet-hedging in bacteria

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Scaling laws in bacterial genomes: a side-effect of selection of mutational robustness?

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of high mutation rates in experimental populations of E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Insertion sequence-driven evolution of Escherichia coli in chemostats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Role of mutator alleles in adaptive evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Perspective: Complex Adaptations and the Evolution of Evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

A long-term evolutionary pressure on the amount of noncoding DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of digital organisms at high mutation rates leads to survival of the flattest

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of evolvability in gene regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Balancing robustness and evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Neutralism and selectionism: a network-based reconciliation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Robustness promotes evolvability of thermotolerance in an RNA virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The effect of genetic robustness on evolvability in digital organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Sexual reproduction reshapes the genetic architecture of digital organisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Eco-evolutionary dynamics, coding structure and the information threshold

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Varying environments can speed up evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Extinctions in heterogeneous environments and the evolution of modularity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Proportionality between variances in gene expression induced by noise and mutation: consequence of evolutionary robustness

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary conditions for the emergence of communication in robots.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Replaying the evolutionary tape: biomimetic reverse engineering of gene networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

PERSPECTIVE:EVOLUTION AND DETECTION OF GENETIC ROBUSTNESS

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolutionary Response of Escherichia coli to Thermal Stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Experiments in microbial evolution: new enzymes, new metabolic activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Experimental adaptive radiation in Pseudomonas

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The Social Lives of Microbes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Cooperation, virulence and siderophore production in bacterial parasites

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Antibiotic resistance and its cost: is it possible to reverse resistance?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Network topology and the evolution of dynamics in an artificial genetic regulatory network model created by whole genome duplication and divergence

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

The effect of elevated mutation rates on the evolution of cooperation and virulence of Pseudomonas aeruginosa

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Evolution of evolvability via adaptation of mutation rates

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

PERSPECTIVE: COMPLEX ADAPTATIONS AND THE EVOLUTION OF EVOLVABILITY.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Chromosome rearrangements and the evolution of genome structuring and adaptability

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2750

Selection for high mutation rates in chemostats

31 March 2020

1 reference

12 December 2020

Evolution of Escherichia coli during growth in a constant environment

1 reference

12 December 2020

Perspective: Evolution and detection of genetic robustness

1 reference

12 December 2020

Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness

1 reference

12 December 2020

Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli

1 reference

12 December 2020

Mutators, population size, adaptive landscape and the adaptation of asexual populations of bacteria

1 reference

12 December 2020

Mutations of Bacteria from Virus Sensitivity to Virus Resistance

1 reference

12 December 2020

Epistasis and frequency dependence influence the fitness of an adaptive mutation in a diversifying lineage

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO2750

1 reference

Dimensions Publication ID

26 August 2017

1023468665

0 references

1 reference